PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42701-42750 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 98.2533 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.3904 | 93.4783 | 87.5000 | 94.1889 | 43 | 3 | 42 | 6 | 2 | 33.3333 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 94.3060 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.8115 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.3303 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 96.3470 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 78.9474 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.1599 | 90.8840 | 87.5000 | 82.4945 | 329 | 33 | 210 | 30 | 30 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.4674 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.5066 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 96.5217 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.2522 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 97.4922 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 90.3226 | 93.3333 | 87.5000 | 96.2791 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 90.3226 | 93.3333 | 87.5000 | 96.6805 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 77.7778 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_siren | homalt | 84.8485 | 82.3529 | 87.5000 | 89.0411 | 28 | 6 | 28 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 92.5234 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.7560 | 11 | 0 | 14 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m1_e0 | het | 90.8397 | 94.4444 | 87.5000 | 92.9204 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 90.8397 | 94.4444 | 87.5000 | 93.8931 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 90.8397 | 94.4444 | 87.5000 | 94.0299 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 96.8254 | 6 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 94.3662 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.4286 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 95.4416 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | het | 90.3226 | 93.3333 | 87.5000 | 98.2721 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 70.0000 | 87.5000 | 98.5102 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | tv | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.3226 | 93.3333 | 87.5000 | 98.2552 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 46.4088 | 31.5789 | 87.5000 | 93.2773 | 6 | 13 | 7 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 60.8696 | 46.6667 | 87.5000 | 96.0784 | 7 | 8 | 7 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | het | 79.5789 | 72.9730 | 87.5000 | 90.3614 | 27 | 10 | 28 | 4 | 2 | 50.0000 | |
| ciseli-custom | SNP | * | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 96.2264 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.2461 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 97.2556 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 97.2603 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.3226 | 93.3333 | 87.5000 | 97.9368 | 56 | 4 | 56 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | decoy | * | 77.7778 | 70.0000 | 87.5000 | 99.9456 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.6540 | 89.8499 | 87.4895 | 45.7726 | 8498 | 960 | 9343 | 1336 | 702 | 52.5449 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.0189 | 97.0540 | 87.4804 | 71.5621 | 593 | 18 | 559 | 80 | 76 | 95.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.5006 | 95.9083 | 87.4802 | 71.8304 | 586 | 25 | 552 | 79 | 77 | 97.4684 | |
| qzeng-custom | INDEL | * | map_l100_m2_e1 | het | 83.6323 | 80.1110 | 87.4775 | 89.7782 | 1877 | 466 | 2431 | 348 | 54 | 15.5172 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | homalt | 85.6946 | 83.9835 | 87.4769 | 60.7791 | 1421 | 271 | 1418 | 203 | 203 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.4279 | 81.5933 | 87.4666 | 33.3286 | 20023 | 4517 | 20601 | 2952 | 2912 | 98.6450 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | * | 74.7799 | 65.3095 | 87.4627 | 78.8610 | 2342 | 1244 | 2344 | 336 | 264 | 78.5714 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | het | 91.7986 | 96.5945 | 87.4564 | 82.3224 | 18437 | 650 | 18295 | 2624 | 207 | 7.8887 | |