PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42251-42300 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.6742 | 85.1675 | 88.2353 | 70.5628 | 178 | 31 | 180 | 24 | 21 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | * | 88.2353 | 88.2353 | 88.2353 | 54.0541 | 15 | 2 | 15 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.5412 | 99.5261 | 88.2353 | 68.7254 | 210 | 1 | 210 | 28 | 27 | 96.4286 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 95.2778 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 95.3168 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 93.8182 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 93.8628 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.5070 | 81.0811 | 88.2353 | 75.7143 | 30 | 7 | 30 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.9091 | 93.7500 | 88.2353 | 76.0563 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | hetalt | 93.7500 | 100.0000 | 88.2353 | 85.0877 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | hetalt | 93.7500 | 100.0000 | 88.2353 | 87.3134 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | hetalt | 93.7500 | 100.0000 | 88.2353 | 87.5912 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 96.7118 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 96.7433 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.7212 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 85.7143 | 83.3333 | 88.2353 | 86.6142 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 85.7143 | 83.3333 | 88.2353 | 88.3562 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 88.5906 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.9091 | 93.7500 | 88.2353 | 65.3061 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 56.2806 | 41.3174 | 88.2353 | 79.4355 | 69 | 98 | 135 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | * | 82.6772 | 77.7778 | 88.2353 | 90.7104 | 14 | 4 | 15 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 96.7803 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.8401 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 94.6541 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 94.7368 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 93.7500 | 100.0000 | 88.2353 | 91.1458 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 93.7500 | 100.0000 | 88.2353 | 92.2374 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 93.7500 | 100.0000 | 88.2353 | 92.4444 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | map_l100_m0_e0 | hetalt | 90.9091 | 93.7500 | 88.2353 | 86.7188 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 90.9091 | 93.7500 | 88.2353 | 86.7188 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9102 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9704 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1927 | 82.3529 | 88.2353 | 94.1379 | 42 | 9 | 30 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.5469 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.2353 | 88.2353 | 88.2353 | 98.6625 | 15 | 2 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 97.8481 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 85.7143 | 83.3333 | 88.2353 | 98.6688 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 97.8589 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.4358 | 82.8084 | 88.2353 | 65.4739 | 631 | 131 | 630 | 84 | 79 | 94.0476 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | het | 89.5522 | 90.9091 | 88.2353 | 97.8358 | 30 | 3 | 30 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 55.0459 | 40.0000 | 88.2353 | 78.7500 | 14 | 21 | 15 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | homalt | 78.9474 | 71.4286 | 88.2353 | 70.6897 | 15 | 6 | 15 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | het | 92.6002 | 97.4203 | 88.2346 | 79.7371 | 15370 | 407 | 15314 | 2042 | 140 | 6.8560 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | het | 93.0274 | 98.3804 | 88.2269 | 82.2633 | 9962 | 164 | 9937 | 1326 | 63 | 4.7511 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e1 | * | 91.8807 | 95.8513 | 88.2259 | 89.6373 | 1109 | 48 | 1109 | 148 | 28 | 18.9189 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.3850 | 94.7826 | 88.2225 | 88.3133 | 2507 | 138 | 2442 | 326 | 84 | 25.7669 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 75.4470 | 65.9048 | 88.2202 | 66.0139 | 692 | 358 | 689 | 92 | 70 | 76.0870 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | * | 92.5287 | 97.2810 | 88.2192 | 97.2498 | 322 | 9 | 322 | 43 | 4 | 9.3023 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.7522 | 14.3959 | 88.2086 | 64.5213 | 392 | 2331 | 389 | 52 | 41 | 78.8462 | |