PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 828 829 830 831 832 833 834 835 836 ... 1720 1721 » 41551-41600 / 86044 show all
jlack-gatk	INDEL	*	map_l150_m1_e0	*	93.5297	98.0568	89.4022	92.0707	1312	26	1316	156	9	5.7692
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	86.5003	83.7811	89.4019	58.5292	842	163	852	101	62	61.3861
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	88.6605	87.9344	89.3987	86.9048	57466	7885	57984	6876	6009	87.3909
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	88.6605	87.9344	89.3987	86.9048	57466	7885	57984	6876	6009	87.3909
ciseli-custom	SNP	tv	map_l125_m2_e0	homalt	87.1292	84.9759	89.3945	70.0273	5113	904	5108	606	472	77.8878
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	92.9134	96.7213	89.3939	84.5794	59	2	59	7	6	85.7143
mlin-fermikit	INDEL	I1_5	map_l150_m1_e0	*	61.2987	46.6403	89.3939	82.1138	236	270	236	28	25	89.2857
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e0	het	89.3939	89.3939	89.3939	97.2454	59	7	59	7	3	42.8571
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e1	het	89.3939	89.3939	89.3939	97.3419	59	7	59	7	3	42.8571
ciseli-custom	SNP	ti	map_l100_m1_e0	*	86.1026	83.0465	89.3922	69.2811	39805	8126	39742	4716	1317	27.9262
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	73.3639	62.2101	89.3910	71.1778	456	277	455	54	30	55.5556
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	73.1236	61.8658	89.3899	45.9110	378	233	337	40	35	87.5000
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	88.6086	87.8487	89.3817	86.9060	57410	7941	58141	6907	5920	85.7101
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	88.6086	87.8487	89.3817	86.9060	57410	7941	58141	6907	5920	85.7101
jlack-gatk	INDEL	I1_5	map_l150_m2_e0	het	93.2231	97.4110	89.3805	93.8420	301	8	303	36	2	5.5556
gduggal-bwafb	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	87.7698	86.2191	89.3773	67.9201	244	39	244	29	29	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	92.3787	95.5903	89.3758	38.2787	672	31	673	80	79	98.7500
qzeng-custom	INDEL	*	map_l250_m2_e0	*	75.8372	65.8610	89.3750	97.9118	218	113	286	34	17	50.0000
jlack-gatk	INDEL	I1_5	map_l150_m2_e1	het	93.2461	97.4763	89.3678	93.8559	309	8	311	37	2	5.4054
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	93.7601	98.6107	89.3644	68.0129	17603	248	17687	2105	19	0.9026
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	92.4479	95.7527	89.3636	86.9652	4058	180	4016	478	89	18.6192
ghariani-varprowl	INDEL	*	map_l125_m2_e1	*	91.8033	94.3820	89.3617	94.1271	2100	125	2100	250	82	32.8000
rpoplin-dv42	INDEL	D16_PLUS	map_l100_m2_e1	het	85.7143	82.3529	89.3617	90.8382	42	9	42	5	2	40.0000
anovak-vg	INDEL	D6_15	segdup	homalt	85.5227	82.0000	89.3617	91.4234	41	9	42	5	3	60.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	92.3077	95.4545	89.3617	96.6284	42	2	42	5	0	0.0000
ghariani-varprowl	SNP	ti	map_l250_m0_e0	het	93.0734	97.1092	89.3596	95.1651	907	27	907	108	15	13.8889
qzeng-custom	INDEL	I6_15	HG002complexvar	homalt	93.7520	98.5997	89.3586	51.1570	1197	17	1226	146	83	56.8493
ghariani-varprowl	INDEL	*	HG002complexvar	het	93.2466	97.4941	89.3538	59.7893	45053	1158	45020	5364	4472	83.3706
jmaeng-gatk	INDEL	D1_5	map_l150_m1_e0	het	93.8151	98.7552	89.3458	92.9596	476	6	478	57	4	7.0175
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	93.5488	98.1667	89.3458	72.6223	2945	55	3346	399	43	10.7769
jlack-gatk	INDEL	I1_5	map_l250_m2_e0	*	92.7660	96.4602	89.3443	97.3426	109	4	109	13	2	15.3846
qzeng-custom	SNP	*	map_l250_m1_e0	het	75.1142	64.7950	89.3431	96.3888	3081	1674	3060	365	301	82.4658
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2645	99.7630	89.3404	69.5631	1684	4	1693	202	155	76.7327
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	93.7133	98.5372	89.3396	84.5796	10643	158	9822	1172	111	9.4710
mlin-fermikit	INDEL	I1_5	map_l150_m2_e0	*	61.4412	46.8208	89.3382	85.2734	243	276	243	29	25	86.2069
ndellapenna-hhga	INDEL	D6_15	map_l100_m1_e0	het	93.2926	97.6190	89.3333	87.2557	123	3	134	16	8	50.0000
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.3848	95.6522	89.3333	91.3793	66	3	67	8	4	50.0000
mlin-fermikit	INDEL	D6_15	*	homalt	93.1078	97.2178	89.3312	62.5603	6150	176	6171	737	721	97.8290
ciseli-custom	SNP	tv	map_l125_m1_e0	homalt	87.0129	84.8123	89.3307	67.3979	4970	890	4965	593	461	77.7403
gduggal-bwafb	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.7638	98.6660	89.3256	80.9138	1997	27	2000	239	13	5.4393
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.2515	91.2014	89.3212	56.4841	1078	104	1079	129	86	66.6667
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	81.1499	74.3504	89.3182	33.8346	3548	1224	393	47	47	100.0000
gduggal-snapplat	INDEL	D1_5	map_siren	het	85.7607	82.4769	89.3168	89.6940	1878	399	2157	258	42	16.2791
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	82.2556	76.2295	89.3162	29.0192	93	29	627	75	75	100.0000
ghariani-varprowl	INDEL	*	map_l125_m1_e0	*	91.7859	94.3996	89.3130	93.6193	1989	118	1989	238	77	32.3529
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.0000	99.2084	89.3112	60.6909	376	3	376	45	44	97.7778
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	79.2227	71.1825	89.3103	43.3419	4918	1991	4921	589	580	98.4720
jpowers-varprowl	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	49.8505	34.5745	89.3103	71.9536	260	492	259	31	20	64.5161
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	89.5432	89.7781	89.3096	71.8319	3601	410	3609	432	17	3.9352
ndellapenna-hhga	INDEL	D6_15	map_l100_m2_e1	het	93.0123	97.0370	89.3082	87.6072	131	4	142	17	9	52.9412

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge