PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4051-4100 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.1475 | 0.0738 | 100.0000 | 0.0000 | 1 | 1354 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0800 | 0.0400 | 100.0000 | 0.0000 | 2 | 4997 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.1099 | 0.0550 | 100.0000 | 0.0000 | 1 | 1818 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0800 | 0.0400 | 100.0000 | 0.0000 | 2 | 4997 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.1099 | 0.0550 | 100.0000 | 0.0000 | 1 | 1818 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.2083 | 0.1043 | 100.0000 | 0.0000 | 1 | 958 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 401 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9653 | 4 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9690 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9493 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 28.7129 | 72 | 2 | 72 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.4366 | 10 | 1 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 99.2812 | 7 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6805 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4104 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2467 | 7 | 0 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6678 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.7136 | 9 | 4 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 10 | 5 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6667 | 10 | 5 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.6879 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.8947 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.4093 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5635 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.5000 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 96.5261 | 56 | 1 | 56 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 96.7367 | 59 | 1 | 59 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8947 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 96.8074 | 59 | 1 | 59 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdup | hetalt | 90.5263 | 82.6923 | 100.0000 | 98.1308 | 43 | 9 | 14 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9941 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9904 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 65.2174 | 7 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.7685 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.6656 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 52.9412 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 97.4684 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 95.5556 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 97.4684 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 62.2951 | 45.2381 | 100.0000 | 99.2868 | 19 | 23 | 19 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.5745 | 3 | 6 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 64.2857 | 47.3684 | 100.0000 | 90.9091 | 9 | 10 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 81.2500 | 68.4211 | 100.0000 | 82.3529 | 13 | 6 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 81.2500 | 68.4211 | 100.0000 | 83.3333 | 13 | 6 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 78.7879 | 65.0000 | 100.0000 | 85.0000 | 13 | 7 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.3077 | 6 | 2 | 1 | 0 | 0 | ||