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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
40651-40700 / 86044 show all
ckim-isaacINDELD1_5map_l100_m1_e0hetalt
77.8589
68.0851
90.9091
88.5813
32153033
100.0000
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
91.2624
91.6185
90.9091
64.6231
317293203216
50.0000
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
85.8676
81.3559
90.9091
64.8402
14433140143
21.4286
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
87.1050
83.6066
90.9091
64.1694
10220100102
20.0000
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
63.4921
48.7805
90.9091
88.2353
20212022
100.0000
egarrison-hhgaINDELD16_PLUSmap_l125_m1_e0het
95.2381
100.0000
90.9091
89.9543
2002021
50.0000
egarrison-hhgaINDELD16_PLUSmap_l125_m2_e0het
95.2381
100.0000
90.9091
90.5983
2002021
50.0000
egarrison-hhgaINDELD16_PLUSmap_l125_m2_e1het
95.2381
100.0000
90.9091
90.7950
2002021
50.0000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
52.4345
36.8421
90.9091
71.0526
7121011
100.0000
eyeh-varpipeINDELC1_5map_l100_m2_e1homalt
0.0000
0.0000
90.9091
94.3782
003031
33.3333
ckim-vqsrINDELI16_PLUSmap_l150_m1_e0*
90.9091
90.9091
90.9091
97.4654
1011010
0.0000
ckim-vqsrINDELI16_PLUSmap_l150_m2_e0*
90.9091
90.9091
90.9091
97.6891
1011010
0.0000
ckim-vqsrINDELI16_PLUSmap_l150_m2_e1*
90.9091
90.9091
90.9091
97.6987
1011010
0.0000
ckim-vqsrINDELD6_15map_l150_m0_e0het
95.2381
100.0000
90.9091
96.1938
2002020
0.0000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.1348
99.7788
90.9039
60.3967
315873158316314
99.3671
gduggal-snapplatSNPtvmap_l125_m0_e0het
89.8264
88.7753
90.9027
88.4354
39074943907391205
52.4297
gduggal-bwavardSNPtvmap_l100_m1_e0het
94.3634
98.1060
90.8959
79.1108
1512529215076151087
5.7616
jlack-gatkSNPtimap_l250_m2_e0*
94.3425
98.0631
90.8939
92.7804
491197491149244
8.9431
ckim-gatkINDEL*map_l100_m0_e0het
94.5578
98.5309
90.8927
91.4725
10061510081015
4.9505
ghariani-varprowlSNPtvmap_l150_m0_e0het
94.6019
98.6282
90.8914
86.7158
280439280428152
18.5053
mlin-fermikitSNP*map_l100_m2_e0*
72.7370
60.6281
90.8897
55.5979
44843291214483544943956
88.0285
gduggal-snapplatSNP*map_l250_m1_e0het
87.0994
83.6172
90.8842
94.6651
39767793978399190
47.6190
jmaeng-gatkINDEL*map_l250_m2_e1*
93.2749
95.7958
90.8832
97.4381
31914319324
12.5000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
83.4511
77.1464
90.8779
45.5977
18605511853186163
87.6344
gduggal-snapplatINDELI1_5HG002compoundhethetalt
56.9417
41.4601
90.8753
78.7291
463465434651467392
83.9400
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
ckim-dragenINDEL*map_l250_m2_e1het
92.7858
94.7867
90.8676
96.7304
20011199202
10.0000
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.2062
93.5907
90.8621
57.8426
10572724105501061847
79.8303
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
77.3509
67.3423
90.8537
63.9164
2991452983027
90.0000
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.6796
92.5249
90.8497
49.7124
557455565625
44.6429
ndellapenna-hhgaINDELI16_PLUSHG002compoundhet*
86.2940
82.1745
90.8483
50.5089
17613821767178133
74.7191
ndellapenna-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
82.5216
75.5967
90.8430
68.5420
26928692748277196
70.7581
ghariani-varprowlSNP*map_l250_m1_e0het
94.1868
97.7918
90.8381
91.9418
4650105465046980
17.0576
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
85.8715
81.4199
90.8380
65.8788
5391238138243
52.4390
ciseli-customINDELD1_5segduphet
92.5651
94.3642
90.8333
95.6342
653396546621
31.8182
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_51to200*
82.8897
76.2238
90.8333
92.9947
10934109111
9.0909
ghariani-varprowlINDELI1_5map_l100_m1_e0het
94.4317
98.3269
90.8333
89.6462
764137637726
33.7662
astatham-gatkINDELD1_5map_l250_m1_e0het
94.3723
98.1982
90.8333
95.7865
1092109111
9.0909
jmaeng-gatkINDEL*map_l250_m2_e0*
93.2353
95.7704
90.8309
97.3828
31714317324
12.5000
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.0567
97.5229
90.8285
81.7751
1909448519163193559
3.0491
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.0567
97.5229
90.8285
81.7751
1909448519163193559
3.0491
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.6003
96.5481
90.8273
56.5817
36361303634367158
43.0518
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.6003
96.5481
90.8273
56.5817
36361303634367158
43.0518
ckim-dragenINDEL*map_l250_m2_e0het
92.7521
94.7619
90.8257
96.6436
19911198202
10.0000
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.1899
100.0000
90.8213
67.6056
18801881918
94.7368
egarrison-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
83.1419
76.6600
90.8213
72.4184
3811163763825
65.7895
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.1899
100.0000
90.8213
67.7067
18801881918
94.7368
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_triTR_11to50*
89.7154
88.6381
90.8193
44.6755
596876599321004991
98.7052
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
95.0884
99.7815
90.8168
71.4761
1827417901814
2.2099