PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40551-40600 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | het | 92.2299 | 93.5897 | 90.9091 | 94.3672 | 73 | 5 | 70 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 71.4286 | 90.9091 | 99.2920 | 30 | 12 | 30 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 95.0000 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.1204 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 94.8598 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m1_e0 | het | 76.9231 | 66.6667 | 90.9091 | 95.0000 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | het | 76.9231 | 66.6667 | 90.9091 | 95.4918 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | het | 74.0741 | 62.5000 | 90.9091 | 95.6175 | 10 | 6 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.3430 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.2381 | 100.0000 | 90.9091 | 99.3526 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.3181 | 84.0000 | 90.9091 | 83.8235 | 42 | 8 | 40 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 90.9091 | 95.6175 | 0 | 0 | 10 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.1166 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.1795 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | homalt | 57.6307 | 42.1875 | 90.9091 | 76.0870 | 27 | 37 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | homalt | 58.4551 | 43.0769 | 90.9091 | 76.7606 | 28 | 37 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | homalt | 57.2597 | 41.7910 | 90.9091 | 76.9231 | 28 | 39 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | homalt | 59.4059 | 44.1176 | 90.9091 | 79.0476 | 15 | 19 | 20 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.2381 | 100.0000 | 90.9091 | 99.3176 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.1831 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.5771 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 97.6319 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 96.1268 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4239 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6645 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6695 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | homalt | 93.0233 | 95.2381 | 90.9091 | 95.1111 | 20 | 1 | 20 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | INDEL | D16_PLUS | func_cds | * | 86.9565 | 83.3333 | 90.9091 | 71.0526 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m1_e0 | het | 90.9091 | 90.9091 | 90.9091 | 97.2569 | 10 | 1 | 10 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 90.9091 | 96.6206 | 0 | 0 | 20 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 90.9091 | 95.7692 | 0 | 0 | 10 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 90.9091 | 96.4111 | 0 | 0 | 20 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 90.4348 | 10 | 2 | 10 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 95.5645 | 9 | 0 | 10 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.3526 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.7620 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 97.8109 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4654 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6891 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6987 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 93.0233 | 95.2381 | 90.9091 | 99.9650 | 20 | 1 | 20 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.3396 | 98.0392 | 90.9091 | 62.3288 | 100 | 2 | 100 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.3005 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | segdup | homalt | 95.2381 | 100.0000 | 90.9091 | 93.2927 | 50 | 0 | 50 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 94.9074 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 95.7198 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | decoy | * | 95.2381 | 100.0000 | 90.9091 | 99.9688 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | func_cds | * | 86.9565 | 83.3333 | 90.9091 | 75.5556 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.0860 | 8 | 0 | 10 | 1 | 0 | 0.0000 | |