PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4001-4050 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6271 | 95.3642 | 100.0000 | 60.5195 | 144 | 7 | 152 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3631 | 98.7342 | 100.0000 | 39.3401 | 234 | 3 | 239 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 53.6585 | 59 | 0 | 57 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 67.5676 | 12 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 52.1739 | 11 | 1 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.5455 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 83.8235 | 11 | 1 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.9259 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 82.3529 | 31 | 2 | 30 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 87.5000 | 77.7778 | 100.0000 | 92.1348 | 7 | 2 | 7 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | tech_badpromoters | homalt | 93.1507 | 87.1795 | 100.0000 | 46.6667 | 34 | 5 | 32 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | * | 57.1429 | 40.0000 | 100.0000 | 99.9776 | 4 | 6 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | het | 50.0000 | 33.3333 | 100.0000 | 99.9769 | 2 | 4 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9773 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | func_cds | homalt | 95.3704 | 91.1504 | 100.0000 | 31.5615 | 206 | 20 | 206 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 60.0000 | 100.0000 | 99.6733 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 99.5387 | 9 | 3 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.8589 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 82.7586 | 70.5882 | 100.0000 | 99.6599 | 12 | 5 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 94.7368 | 90.0000 | 100.0000 | 99.5183 | 9 | 1 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8539 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 37.3832 | 22.9885 | 100.0000 | 99.9711 | 20 | 67 | 20 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 31.5789 | 18.7500 | 100.0000 | 99.9839 | 3 | 13 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 98.7254 | 22 | 3 | 22 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.0392 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9971 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9953 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 66.6667 | 3 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 88.2353 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 98.4375 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | * | * | 0.1179 | 0.0590 | 100.0000 | 0.0000 | 4 | 6780 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | * | het | 0.1898 | 0.0950 | 100.0000 | 0.0000 | 3 | 3156 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | HG002complexvar | * | 0.4857 | 0.2435 | 100.0000 | 0.0000 | 4 | 1639 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | HG002complexvar | het | 0.5405 | 0.2710 | 100.0000 | 0.0000 | 3 | 1104 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | HG002compoundhet | * | 0.1707 | 0.0854 | 100.0000 | 0.0000 | 2 | 2339 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | HG002compoundhet | het | 0.4926 | 0.2469 | 100.0000 | 0.0000 | 1 | 404 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.1123 | 0.0562 | 100.0000 | 0.0000 | 2 | 3559 | 1 | 0 | 0 | ||