PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40301-40350 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | homalt | 80.7692 | 72.4138 | 91.3043 | 91.7563 | 21 | 8 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 89.6396 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.0862 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.3529 | 75.0000 | 91.3043 | 90.1709 | 21 | 7 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.4545 | 100.0000 | 91.3043 | 37.8378 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.0400 | 86.8852 | 91.3043 | 57.9268 | 106 | 16 | 126 | 12 | 11 | 91.6667 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | homalt | 95.4545 | 100.0000 | 91.3043 | 92.0690 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 91.4851 | 91.6667 | 91.3043 | 97.8281 | 22 | 2 | 21 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 95.0943 | 99.2126 | 91.3043 | 54.0000 | 126 | 1 | 126 | 12 | 11 | 91.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 88.0965 | 85.1064 | 91.3043 | 75.1351 | 40 | 7 | 42 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.6217 | 88.0000 | 91.3043 | 43.9024 | 22 | 3 | 21 | 2 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.6814 | 77.2332 | 91.3043 | 82.9887 | 977 | 288 | 1029 | 98 | 59 | 60.2041 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 91.3043 | 96.4615 | 0 | 0 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.1709 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.8000 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | * | 91.7031 | 92.1053 | 91.3043 | 96.6628 | 105 | 9 | 105 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.9992 | 39.3519 | 91.3043 | 52.3316 | 85 | 131 | 84 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | het | 93.3333 | 95.4545 | 91.3043 | 68.9189 | 42 | 2 | 42 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | homalt | 59.7865 | 44.4444 | 91.3043 | 78.7037 | 16 | 20 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 58.6900 | 43.2432 | 91.3043 | 78.8991 | 16 | 21 | 21 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.6509 | 92.0000 | 91.3043 | 82.6415 | 46 | 4 | 42 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002compoundhet | het | 89.2228 | 87.2340 | 91.3043 | 94.7005 | 41 | 6 | 21 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.6509 | 92.0000 | 91.3043 | 85.0649 | 46 | 4 | 42 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 86.7711 | 82.6667 | 91.3043 | 65.6716 | 62 | 13 | 63 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 87.8327 | 84.6154 | 91.3043 | 89.7321 | 22 | 4 | 21 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.3043 | 91.3043 | 91.3043 | 88.3838 | 21 | 2 | 21 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 97.4099 | 21 | 3 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 90.1709 | 20 | 0 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.4545 | 100.0000 | 91.3043 | 91.2214 | 20 | 0 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.4545 | 100.0000 | 91.3043 | 91.3858 | 20 | 0 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.4545 | 100.0000 | 91.3043 | 34.2857 | 21 | 0 | 21 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.6217 | 88.0000 | 91.3043 | 42.5000 | 22 | 3 | 21 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | hetalt | 91.3043 | 91.3043 | 91.3043 | 96.2602 | 21 | 2 | 21 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.6217 | 88.0000 | 91.3043 | 82.5095 | 44 | 6 | 42 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 95.0943 | 99.2126 | 91.3043 | 52.2491 | 126 | 1 | 126 | 12 | 11 | 91.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | * | 84.0000 | 77.7778 | 91.3043 | 94.3902 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 84.8287 | 79.2124 | 91.3021 | 39.5276 | 3681 | 966 | 1753 | 167 | 81 | 48.5030 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.0924 | 99.2138 | 91.2996 | 66.9963 | 2524 | 20 | 2529 | 241 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.8454 | 79.2480 | 91.2936 | 44.8269 | 1665 | 436 | 2590 | 247 | 237 | 95.9514 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | het | 93.5851 | 96.0000 | 91.2888 | 86.8239 | 816 | 34 | 765 | 73 | 70 | 95.8904 | |
| ghariani-varprowl | INDEL | I1_5 | * | * | 89.9389 | 88.6296 | 91.2876 | 58.9415 | 133532 | 17131 | 133404 | 12732 | 11050 | 86.7892 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.4509 | 70.3322 | 91.2863 | 53.7682 | 2456 | 1036 | 1540 | 147 | 142 | 96.5986 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.7051 | 92.1296 | 91.2844 | 63.1134 | 199 | 17 | 199 | 19 | 15 | 78.9474 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.8733 | 81.0734 | 91.2773 | 61.1380 | 287 | 67 | 293 | 28 | 27 | 96.4286 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | * | 93.1788 | 95.1613 | 91.2773 | 90.7573 | 295 | 15 | 293 | 28 | 6 | 21.4286 | |
| jlack-gatk | INDEL | * | HG002compoundhet | * | 91.0082 | 90.7410 | 91.2769 | 62.3551 | 27186 | 2774 | 27070 | 2587 | 2465 | 95.2841 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | * | 93.4849 | 95.8042 | 91.2752 | 95.1513 | 137 | 6 | 136 | 13 | 2 | 15.3846 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | het | 94.5416 | 98.0519 | 91.2738 | 94.1930 | 906 | 18 | 910 | 87 | 6 | 6.8966 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 61.6323 | 46.5246 | 91.2698 | 88.3076 | 917 | 1054 | 920 | 88 | 9 | 10.2273 | |