PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40051-40100 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | het | 43.1373 | 28.2051 | 91.6667 | 96.4072 | 11 | 28 | 11 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 69.7183 | 56.2500 | 91.6667 | 74.4681 | 9 | 7 | 11 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 54.9313 | 39.2157 | 91.6667 | 45.4545 | 20 | 31 | 11 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 90.9774 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.9362 | 86.3636 | 91.6667 | 83.5616 | 57 | 9 | 55 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0815 | 22 | 2 | 22 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 97.0732 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.2376 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.6990 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.4815 | 73.3333 | 91.6667 | 98.2609 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0998 | 22 | 2 | 22 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m1_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 82.0896 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 84.8101 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e1 | homalt | 81.4815 | 73.3333 | 91.6667 | 85.1852 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.6522 | 100.0000 | 91.6667 | 99.1831 | 10 | 0 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 95.6204 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 95.3125 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 95.7447 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 77.1429 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 96.9388 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 89.5652 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 88.1188 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 89.3805 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 54.0984 | 77 | 0 | 77 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.6522 | 100.0000 | 91.6667 | 99.2551 | 10 | 0 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 95.6522 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 95.2381 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 95.6679 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 84.6154 | 78.5714 | 91.6667 | 88.3495 | 11 | 3 | 11 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 97.4630 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.6990 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.2376 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 91.6667 | 85.1546 | 0 | 0 | 66 | 6 | 4 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 91.4286 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 88.0000 | 84.6154 | 91.6667 | 95.7895 | 22 | 4 | 22 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.5517 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.8504 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | het | 89.6574 | 87.7342 | 91.6667 | 93.1495 | 515 | 72 | 517 | 47 | 2 | 4.2553 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 64.9523 | 50.2994 | 91.6515 | 76.9456 | 504 | 498 | 505 | 46 | 8 | 17.3913 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.4729 | 99.6276 | 91.6509 | 80.5506 | 2408 | 9 | 2415 | 220 | 130 | 59.0909 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.0202 | 94.4334 | 91.6486 | 40.7109 | 8991 | 530 | 11863 | 1081 | 1022 | 94.5421 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 67.7973 | 53.7975 | 91.6468 | 94.9895 | 765 | 657 | 768 | 70 | 16 | 22.8571 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 91.4286 | 91.2173 | 91.6409 | 57.2469 | 592 | 57 | 592 | 54 | 52 | 96.2963 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.0270 | 60.6987 | 91.6395 | 81.0025 | 834 | 540 | 844 | 77 | 2 | 2.5974 | |
| ghariani-varprowl | SNP | tv | map_l250_m1_e0 | * | 94.3742 | 97.2799 | 91.6370 | 91.1799 | 2575 | 72 | 2575 | 235 | 32 | 13.6170 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.6012 | 97.7642 | 91.6364 | 62.8378 | 481 | 11 | 504 | 46 | 23 | 50.0000 | |
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | het | 94.9162 | 98.4397 | 91.6362 | 58.2975 | 20441 | 324 | 19546 | 1784 | 1236 | 69.2825 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1859 | 99.0236 | 91.6345 | 64.6332 | 27686 | 273 | 27790 | 2537 | 281 | 11.0761 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 80.6843 | 72.0726 | 91.6333 | 55.4102 | 1311 | 508 | 2749 | 251 | 244 | 97.2112 | |