PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39501-39550 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.9416 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 95.4064 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 95.5172 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | func_cds | * | 96.0000 | 100.0000 | 92.3077 | 81.9444 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.3077 | 92.3077 | 92.3077 | 48.0000 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.2256 | 88.2353 | 92.3077 | 92.7509 | 45 | 6 | 36 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 65.1786 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.3077 | 92.3077 | 92.3077 | 66.6667 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.3966 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l250_m0_e0 | homalt | 94.1176 | 96.0000 | 92.3077 | 96.7296 | 24 | 1 | 24 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 91.8239 | 24 | 0 | 24 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 96.0606 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.8177 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 85.7143 | 80.0000 | 92.3077 | 99.2499 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 92.3077 | 95.7096 | 0 | 0 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 88.7931 | 12 | 4 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 92.3077 | 95.7377 | 0 | 0 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.3077 | 94.9020 | 0 | 0 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 91.6667 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 71.4894 | 58.3333 | 92.3077 | 78.3333 | 14 | 10 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 77.4194 | 66.6667 | 92.3077 | 69.0476 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 77.4194 | 66.6667 | 92.3077 | 72.3404 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 77.4194 | 66.6667 | 92.3077 | 72.3404 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 61.5385 | 46.1538 | 92.3077 | 75.4717 | 12 | 14 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 61.5385 | 46.1538 | 92.3077 | 75.4717 | 12 | 14 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.1565 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.2162 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 92.3977 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | * | 90.5660 | 88.8889 | 92.3077 | 91.7460 | 24 | 3 | 24 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | * | 90.5660 | 88.8889 | 92.3077 | 92.2619 | 24 | 3 | 24 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.7500 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4474 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | hetalt | 78.8060 | 68.7500 | 92.3077 | 82.6667 | 11 | 5 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.7143 | 80.0000 | 92.3077 | 93.4673 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 77.1930 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 37.5000 | 92.3077 | 99.6143 | 6 | 10 | 60 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 92.3077 | 95.2899 | 0 | 0 | 12 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 92.3077 | 97.4708 | 0 | 0 | 12 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 92.3077 | 97.0721 | 0 | 0 | 24 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | het | 88.8889 | 85.7143 | 92.3077 | 86.1702 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | decoy | * | 96.0000 | 100.0000 | 92.3077 | 99.7796 | 4 | 0 | 12 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e0 | het | 40.6780 | 26.0870 | 92.3077 | 96.5333 | 12 | 34 | 12 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.3288 | 59.4595 | 92.3077 | 71.1111 | 22 | 15 | 24 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 69.5312 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.4477 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 97.8003 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 96.5699 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 93.6275 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.6449 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |