PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38601-38650 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | * | map_l150_m2_e1 | * | 95.7468 | 98.3322 | 93.2939 | 93.1304 | 1415 | 24 | 1419 | 102 | 10 | 9.8039 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.5300 | 100.0000 | 93.2927 | 78.6736 | 153 | 0 | 153 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | SNP | * | tech_badpromoters | * | 95.3271 | 97.4522 | 93.2927 | 57.8406 | 153 | 4 | 153 | 11 | 2 | 18.1818 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.5300 | 100.0000 | 93.2927 | 77.6871 | 153 | 0 | 153 | 11 | 10 | 90.9091 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.9497 | 96.6667 | 93.2927 | 74.5736 | 319 | 11 | 306 | 22 | 18 | 81.8182 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | het | 95.1992 | 97.1870 | 93.2911 | 82.3459 | 7048 | 204 | 7064 | 508 | 83 | 16.3386 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6971 | 98.2332 | 93.2886 | 69.7769 | 278 | 5 | 278 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8251 | 98.5087 | 93.2839 | 75.9171 | 6143 | 93 | 6167 | 444 | 105 | 23.6486 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 32.6838 | 19.8128 | 93.2836 | 48.6590 | 127 | 514 | 125 | 9 | 4 | 44.4444 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.6186 | 98.0736 | 93.2836 | 55.1652 | 560 | 11 | 1000 | 72 | 71 | 98.6111 | |
| ghariani-varprowl | INDEL | D6_15 | * | homalt | 74.2367 | 61.6503 | 93.2807 | 52.1893 | 3900 | 2426 | 3901 | 281 | 242 | 86.1210 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 96.5217 | 100.0000 | 93.2773 | 95.6962 | 111 | 0 | 111 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 93.2755 | 88.9976 | 0 | 0 | 860 | 62 | 31 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 95.2845 | 97.3822 | 93.2752 | 86.3249 | 744 | 20 | 749 | 54 | 4 | 7.4074 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.1099 | 99.1242 | 93.2735 | 89.2977 | 1245 | 11 | 1248 | 90 | 6 | 6.6667 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | het | 94.9693 | 96.7280 | 93.2734 | 75.1430 | 4257 | 144 | 4257 | 307 | 123 | 40.0651 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.7448 | 77.6461 | 93.2722 | 41.8494 | 917 | 264 | 915 | 66 | 66 | 100.0000 | |
| jpowers-varprowl | INDEL | * | func_cds | * | 91.7808 | 90.3371 | 93.2715 | 40.6336 | 402 | 43 | 402 | 29 | 28 | 96.5517 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | * | 93.7816 | 94.2982 | 93.2706 | 87.7493 | 1290 | 78 | 1289 | 93 | 34 | 36.5591 | |
| ndellapenna-hhga | INDEL | I16_PLUS | * | homalt | 94.0659 | 94.8751 | 93.2704 | 61.1057 | 1481 | 80 | 1483 | 107 | 75 | 70.0935 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | * | 92.3810 | 91.5094 | 93.2692 | 96.3636 | 97 | 9 | 97 | 7 | 3 | 42.8571 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.4522 | 91.6512 | 93.2674 | 90.5520 | 1976 | 180 | 1981 | 143 | 93 | 65.0350 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5172 | 97.8799 | 93.2660 | 69.8477 | 277 | 6 | 277 | 20 | 20 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002compoundhet | het | 95.8083 | 98.4954 | 93.2640 | 79.3041 | 1702 | 26 | 1703 | 123 | 122 | 99.1870 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | homalt | 77.5054 | 66.3037 | 93.2615 | 54.3852 | 1035 | 526 | 1038 | 75 | 74 | 98.6667 | |
| jpowers-varprowl | INDEL | I1_5 | HG002complexvar | het | 94.3417 | 95.4478 | 93.2609 | 57.7585 | 17361 | 828 | 17340 | 1253 | 1221 | 97.4461 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.7642 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.8743 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7587 | 94.2652 | 93.2576 | 87.8356 | 1315 | 80 | 1314 | 95 | 35 | 36.8421 | |
| ciseli-custom | SNP | tv | HG002complexvar | * | 94.9824 | 96.7736 | 93.2564 | 24.4003 | 238213 | 7942 | 236085 | 17072 | 2875 | 16.8404 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 75.1306 | 62.9044 | 93.2559 | 77.8634 | 1672 | 986 | 1687 | 122 | 15 | 12.2951 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1767 | 75.0649 | 93.2540 | 64.2807 | 289 | 96 | 470 | 34 | 7 | 20.5882 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 89.8280 | 86.6492 | 93.2489 | 90.9553 | 662 | 102 | 663 | 48 | 4 | 8.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.1353 | 97.1012 | 93.2475 | 55.2934 | 10786 | 322 | 11006 | 797 | 695 | 87.2020 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 89.2616 | 85.6061 | 93.2432 | 87.4150 | 113 | 19 | 69 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 77.3118 | 66.0300 | 93.2432 | 67.5642 | 484 | 249 | 483 | 35 | 30 | 85.7143 | |
| jlack-gatk | INDEL | D6_15 | HG002compoundhet | * | 92.1390 | 91.0641 | 93.2396 | 35.4470 | 8224 | 807 | 8220 | 596 | 552 | 92.6174 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3267 | 97.5124 | 93.2367 | 89.1110 | 196 | 5 | 193 | 14 | 1 | 7.1429 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1773 | 99.3135 | 93.2331 | 71.4592 | 1736 | 12 | 1736 | 126 | 98 | 77.7778 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | het | 95.7529 | 98.4127 | 93.2331 | 89.8162 | 124 | 2 | 124 | 9 | 2 | 22.2222 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | * | 91.9264 | 90.6615 | 93.2271 | 91.6942 | 466 | 48 | 468 | 34 | 11 | 32.3529 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | * | 95.7609 | 98.4375 | 93.2260 | 93.1205 | 1386 | 22 | 1390 | 101 | 9 | 8.9109 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.5879 | 91.9586 | 93.2258 | 73.3046 | 1155 | 101 | 1156 | 84 | 55 | 65.4762 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.3708 | 77.0533 | 93.2238 | 41.8507 | 910 | 271 | 908 | 66 | 66 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3413 | 97.5610 | 93.2203 | 88.0081 | 160 | 4 | 110 | 8 | 6 | 75.0000 | |
| jlack-gatk | SNP | ti | map_siren | hetalt | 94.8276 | 96.4912 | 93.2203 | 77.6515 | 55 | 2 | 55 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | * | 91.6667 | 90.1639 | 93.2203 | 95.5752 | 275 | 30 | 275 | 20 | 6 | 30.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 62.9688 | 47.5410 | 93.2203 | 73.6607 | 58 | 64 | 55 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | * | 93.1619 | 93.1034 | 93.2203 | 93.1949 | 54 | 4 | 55 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | * | 94.0171 | 94.8276 | 93.2203 | 95.0545 | 55 | 3 | 55 | 4 | 2 | 50.0000 | |