PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38351-38400 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | tv | map_l250_m2_e0 | het | 94.5749 | 95.6701 | 93.5045 | 91.5751 | 1856 | 84 | 1857 | 129 | 24 | 18.6047 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2099 | 94.9264 | 93.5043 | 70.1531 | 580 | 31 | 547 | 38 | 36 | 94.7368 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1082 | 92.7162 | 93.5035 | 64.4487 | 1222 | 96 | 1209 | 84 | 76 | 90.4762 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 80.5781 | 70.7937 | 93.5010 | 80.1167 | 446 | 184 | 446 | 31 | 9 | 29.0323 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4861 | 99.6732 | 93.4966 | 73.1567 | 1220 | 4 | 1222 | 85 | 31 | 36.4706 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 88.1449 | 83.3732 | 93.4959 | 66.1468 | 697 | 139 | 690 | 48 | 38 | 79.1667 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.8529 | 96.2516 | 93.4942 | 76.5691 | 3030 | 118 | 3061 | 213 | 10 | 4.6948 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.1482 | 96.8620 | 93.4939 | 39.6090 | 10032 | 325 | 14902 | 1037 | 946 | 91.2247 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.0284 | 92.5690 | 93.4924 | 72.3704 | 872 | 70 | 862 | 60 | 55 | 91.6667 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.1064 | 98.8722 | 93.4911 | 83.7545 | 1315 | 15 | 1106 | 77 | 66 | 85.7143 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 17.3710 | 9.5750 | 93.4911 | 35.2490 | 187 | 1766 | 158 | 11 | 11 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l100_m1_e0 | homalt | 85.1872 | 78.2396 | 93.4890 | 80.8459 | 960 | 267 | 1321 | 92 | 13 | 14.1304 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | * | 95.0024 | 96.5659 | 93.4887 | 74.9387 | 71424 | 2540 | 70426 | 4905 | 414 | 8.4404 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.5989 | 77.2532 | 93.4884 | 70.0139 | 180 | 53 | 201 | 14 | 12 | 85.7143 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | * | 96.4575 | 99.6230 | 93.4869 | 79.0795 | 6606 | 25 | 6574 | 458 | 11 | 2.4018 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.6346 | 95.8110 | 93.4868 | 75.2785 | 3751 | 164 | 3818 | 266 | 220 | 82.7068 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m0_e0 | het | 94.5559 | 95.6522 | 93.4844 | 89.8153 | 330 | 15 | 330 | 23 | 9 | 39.1304 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | * | 95.1081 | 96.7894 | 93.4842 | 94.5833 | 1025 | 34 | 1033 | 72 | 18 | 25.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 96.0274 | 98.7132 | 93.4839 | 90.1867 | 1074 | 14 | 1076 | 75 | 6 | 8.0000 | |
| cchapple-custom | SNP | tv | map_l250_m1_e0 | het | 94.4921 | 95.5232 | 93.4830 | 91.0657 | 1707 | 80 | 1707 | 119 | 24 | 20.1681 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | het | 93.3381 | 93.1962 | 93.4803 | 85.9836 | 9835 | 718 | 9836 | 686 | 353 | 51.4577 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 96.7742 | 43 | 1 | 43 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 93.3140 | 43 | 1 | 43 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.3802 | 99.4681 | 93.4783 | 60.2735 | 561 | 3 | 1032 | 72 | 70 | 97.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | * | 92.1758 | 90.9091 | 93.4783 | 95.3892 | 130 | 13 | 129 | 9 | 1 | 11.1111 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | hetalt | 96.6292 | 100.0000 | 93.4783 | 84.9673 | 43 | 0 | 43 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | hetalt | 96.6292 | 100.0000 | 93.4783 | 84.9673 | 43 | 0 | 43 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m0_e0 | * | 93.4783 | 93.4783 | 93.4783 | 97.1622 | 43 | 3 | 43 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.1017 | 90.7652 | 93.4783 | 56.5012 | 344 | 35 | 344 | 24 | 14 | 58.3333 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | * | 93.4783 | 93.4783 | 93.4783 | 97.4011 | 43 | 3 | 43 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 94.5691 | 43 | 1 | 43 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.6065 | 77.2727 | 93.4783 | 86.4507 | 85 | 25 | 86 | 6 | 4 | 66.6667 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.0894 | 98.8506 | 93.4783 | 84.2466 | 86 | 1 | 86 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | homalt | 45.0525 | 29.6785 | 93.4732 | 26.9165 | 360 | 853 | 401 | 28 | 27 | 96.4286 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.5155 | 99.7628 | 93.4730 | 54.4025 | 6728 | 16 | 6559 | 458 | 33 | 7.2052 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.3973 | 93.3232 | 93.4716 | 64.9435 | 1230 | 88 | 1217 | 85 | 81 | 95.2941 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 57.4446 | 41.4634 | 93.4708 | 72.4562 | 561 | 792 | 544 | 38 | 36 | 94.7368 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 93.2190 | 92.9752 | 93.4641 | 64.4599 | 225 | 17 | 286 | 20 | 5 | 25.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | het | 94.9153 | 96.4187 | 93.4579 | 83.5312 | 700 | 26 | 700 | 49 | 6 | 12.2449 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | * | 83.4615 | 75.3968 | 93.4579 | 84.7795 | 95 | 31 | 100 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | het | 93.8879 | 94.3218 | 93.4579 | 89.6652 | 299 | 18 | 300 | 21 | 3 | 14.2857 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 93.4271 | 93.3962 | 93.4579 | 92.5952 | 99 | 7 | 100 | 7 | 1 | 14.2857 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 92.7767 | 92.1053 | 93.4579 | 87.1239 | 105 | 9 | 100 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | hetalt | 46.6253 | 31.0606 | 93.4579 | 92.4542 | 41 | 91 | 100 | 7 | 5 | 71.4286 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 59.5825 | 43.7326 | 93.4524 | 71.9533 | 157 | 202 | 157 | 11 | 10 | 90.9091 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e0 | het | 93.2998 | 93.1527 | 93.4473 | 85.9522 | 9727 | 715 | 9726 | 682 | 352 | 51.6129 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.1461 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.3041 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.7398 | 88.1890 | 93.4426 | 69.3467 | 112 | 15 | 114 | 8 | 7 | 87.5000 | |