PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37451-37500 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.3741 | 83.1461 | 94.3038 | 79.3464 | 148 | 30 | 149 | 9 | 9 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 77.6186 | 65.9509 | 94.3020 | 93.0987 | 215 | 111 | 331 | 20 | 8 | 40.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 96.2963 | 98.3784 | 94.3005 | 95.8016 | 182 | 3 | 182 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2102 | 88.3164 | 94.3001 | 47.2057 | 2434 | 322 | 2432 | 147 | 146 | 99.3197 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2698 | 88.4298 | 94.2982 | 65.0842 | 214 | 28 | 215 | 13 | 13 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.2980 | 98.3871 | 94.2957 | 66.7441 | 1159 | 19 | 1620 | 98 | 95 | 96.9388 | |
| jpowers-varprowl | INDEL | * | map_l125_m0_e0 | * | 93.0500 | 91.8367 | 94.2957 | 90.4640 | 810 | 72 | 810 | 49 | 30 | 61.2245 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0329 | 91.8045 | 94.2947 | 54.2066 | 3607 | 322 | 3603 | 218 | 214 | 98.1651 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9065 | 89.6373 | 94.2935 | 88.6839 | 346 | 40 | 347 | 21 | 14 | 66.6667 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.6316 | 99.0933 | 94.2892 | 74.2061 | 3060 | 28 | 3071 | 186 | 41 | 22.0430 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.7305 | 99.3032 | 94.2877 | 46.8635 | 6698 | 47 | 6685 | 405 | 129 | 31.8519 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7848 | 99.4179 | 94.2876 | 66.3675 | 4270 | 25 | 4275 | 259 | 18 | 6.9498 | |
| anovak-vg | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.3736 | 96.4849 | 94.2876 | 62.2229 | 34174 | 1245 | 35108 | 2127 | 869 | 40.8557 | |
| anovak-vg | SNP | ti | tech_badpromoters | het | 83.5443 | 75.0000 | 94.2857 | 45.3125 | 33 | 11 | 33 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | homalt | 73.0707 | 59.6491 | 94.2857 | 96.1957 | 34 | 23 | 33 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 89.6323 | 85.4167 | 94.2857 | 93.1800 | 164 | 28 | 165 | 10 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8262 | 99.5074 | 94.2857 | 83.6449 | 606 | 3 | 528 | 32 | 23 | 71.8750 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 94.7368 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.5864 | 85.3333 | 94.2857 | 58.3333 | 64 | 11 | 66 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 93.7984 | 93.3162 | 94.2857 | 89.3910 | 726 | 52 | 726 | 44 | 22 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.2857 | 94.2857 | 94.2857 | 79.7688 | 33 | 2 | 33 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.7833 | 93.2862 | 94.2857 | 69.6641 | 264 | 19 | 264 | 16 | 13 | 81.2500 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.9577 | 91.6667 | 94.2857 | 75.0000 | 33 | 3 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 78.5714 | 94.2857 | 95.4368 | 33 | 9 | 33 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 94.7368 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | het | 97.0588 | 100.0000 | 94.2857 | 41.6667 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 80.1478 | 69.6970 | 94.2857 | 75.1773 | 23 | 10 | 33 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m1_e0 | homalt | 87.6307 | 81.8533 | 94.2857 | 87.4897 | 424 | 94 | 429 | 26 | 1 | 3.8462 | |
| ltrigg-rtg2 | SNP | tv | tech_badpromoters | het | 97.0588 | 100.0000 | 94.2857 | 65.6863 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | homalt | 97.0588 | 100.0000 | 94.2857 | 54.5455 | 33 | 0 | 33 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | het | 46.2394 | 30.6306 | 94.2857 | 92.2566 | 34 | 77 | 33 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 92.8571 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 96.2945 | 98.3908 | 94.2857 | 90.2392 | 856 | 14 | 858 | 52 | 5 | 9.6154 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 97.0588 | 100.0000 | 94.2857 | 87.3646 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 97.0588 | 100.0000 | 94.2857 | 88.4868 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 97.0588 | 100.0000 | 94.2857 | 88.7097 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | * | 95.8065 | 97.3770 | 94.2857 | 95.7792 | 297 | 8 | 297 | 18 | 4 | 22.2222 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9550 | 99.7815 | 94.2842 | 72.3244 | 1827 | 4 | 1831 | 111 | 5 | 4.5045 | |
| eyeh-varpipe | INDEL | C1_5 | * | het | 91.5057 | 88.8889 | 94.2813 | 91.6246 | 8 | 1 | 1220 | 74 | 16 | 21.6216 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.9959 | 91.7476 | 94.2786 | 67.1300 | 756 | 68 | 758 | 46 | 41 | 89.1304 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m0_e0 | * | 93.8918 | 93.5110 | 94.2757 | 85.2184 | 807 | 56 | 807 | 49 | 23 | 46.9388 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8208 | 99.5074 | 94.2755 | 84.0377 | 606 | 3 | 527 | 32 | 22 | 68.7500 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 86.5961 | 80.0752 | 94.2731 | 78.2359 | 213 | 53 | 214 | 13 | 13 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9376 | 99.7576 | 94.2726 | 71.9833 | 823 | 2 | 823 | 50 | 47 | 94.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9376 | 99.7576 | 94.2726 | 71.9833 | 823 | 2 | 823 | 50 | 47 | 94.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.7473 | 99.3571 | 94.2711 | 57.1736 | 10663 | 69 | 10696 | 650 | 69 | 10.6154 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 96.2766 | 98.3696 | 94.2708 | 95.7248 | 181 | 3 | 181 | 11 | 1 | 9.0909 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 59.0036 | 42.9403 | 94.2675 | 81.9124 | 295 | 392 | 296 | 18 | 12 | 66.6667 | |
| ckim-isaac | SNP | tv | HG002compoundhet | * | 85.3990 | 78.0567 | 94.2659 | 45.8825 | 6965 | 1958 | 7217 | 439 | 382 | 87.0159 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.6947 | 87.3874 | 94.2623 | 81.0323 | 582 | 84 | 575 | 35 | 32 | 91.4286 | |