PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36701-36750 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | het | 95.9914 | 97.0526 | 94.9532 | 68.8933 | 20580 | 625 | 20583 | 1094 | 492 | 44.9726 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 94.8873 | 94.8220 | 94.9527 | 90.6157 | 293 | 16 | 301 | 16 | 2 | 12.5000 | |
| eyeh-varpipe | INDEL | D1_5 | HG002complexvar | homalt | 96.8706 | 98.8677 | 94.9525 | 54.3549 | 10478 | 120 | 10196 | 542 | 535 | 98.7085 | |
| egarrison-hhga | INDEL | D16_PLUS | * | homalt | 94.6666 | 94.3853 | 94.9495 | 59.9952 | 1597 | 95 | 1598 | 85 | 63 | 74.1176 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | * | 95.5436 | 96.1451 | 94.9495 | 90.2750 | 848 | 34 | 846 | 45 | 8 | 17.7778 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.4103 | 97.9167 | 94.9495 | 46.7742 | 188 | 4 | 188 | 10 | 9 | 90.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.9792 | 91.0891 | 94.9495 | 93.3557 | 92 | 9 | 94 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m0_e0 | * | 94.8537 | 94.7581 | 94.9495 | 88.5760 | 470 | 26 | 470 | 25 | 10 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | * | 94.5605 | 94.1748 | 94.9495 | 84.3106 | 97 | 6 | 94 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | het | 95.7149 | 96.4968 | 94.9456 | 82.1389 | 1212 | 44 | 1221 | 65 | 8 | 12.3077 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | * | 95.4802 | 96.0227 | 94.9438 | 94.8196 | 169 | 7 | 169 | 9 | 1 | 11.1111 | |
| jlack-gatk | INDEL | I6_15 | segdup | * | 95.7507 | 96.5714 | 94.9438 | 93.8621 | 169 | 6 | 169 | 9 | 1 | 11.1111 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 93.1129 | 91.3514 | 94.9438 | 95.8431 | 169 | 16 | 169 | 9 | 4 | 44.4444 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.6258 | 94.3116 | 94.9422 | 66.8176 | 6350 | 383 | 6401 | 341 | 317 | 92.9619 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | * | 95.5016 | 96.0682 | 94.9416 | 89.0312 | 733 | 30 | 732 | 39 | 8 | 20.5128 | |
| cchapple-custom | SNP | * | map_l125_m2_e0 | het | 96.1245 | 97.3395 | 94.9395 | 78.6207 | 28538 | 780 | 28573 | 1523 | 346 | 22.7183 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | * | 95.1094 | 95.2803 | 94.9391 | 85.9113 | 3977 | 197 | 3977 | 212 | 55 | 25.9434 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.7432 | 96.5626 | 94.9376 | 45.0963 | 11040 | 393 | 11177 | 596 | 251 | 42.1141 | |
| ciseli-custom | SNP | * | tech_badpromoters | homalt | 95.5888 | 96.2500 | 94.9367 | 52.9762 | 77 | 3 | 75 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | * | 84.6900 | 76.4398 | 94.9367 | 90.2107 | 146 | 45 | 150 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 93.7500 | 92.5926 | 94.9367 | 88.7357 | 450 | 36 | 450 | 24 | 17 | 70.8333 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.9472 | 80.1980 | 94.9367 | 93.2536 | 81 | 20 | 75 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.6528 | 90.4762 | 94.9367 | 73.7977 | 152 | 16 | 150 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.7500 | 92.5926 | 94.9367 | 79.3194 | 75 | 6 | 75 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.3614 | 86.2069 | 94.9367 | 84.3874 | 75 | 12 | 75 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | * | 94.3297 | 93.7323 | 94.9347 | 89.2465 | 4292 | 287 | 4292 | 229 | 122 | 53.2751 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.3965 | 91.9097 | 94.9321 | 59.4498 | 28867 | 2541 | 29709 | 1586 | 1202 | 75.7881 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.3965 | 91.9097 | 94.9321 | 59.4498 | 28867 | 2541 | 29709 | 1586 | 1202 | 75.7881 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0127 | 99.1870 | 94.9318 | 60.8397 | 488 | 4 | 487 | 26 | 25 | 96.1538 | |
| qzeng-custom | INDEL | * | map_l100_m0_e0 | homalt | 82.8374 | 73.4774 | 94.9301 | 85.9563 | 374 | 135 | 543 | 29 | 6 | 20.6897 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.3834 | 97.8844 | 94.9277 | 48.0419 | 3979 | 86 | 4005 | 214 | 3 | 1.4019 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 90.5802 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 92.4672 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 67.4944 | 52.3636 | 94.9227 | 82.7953 | 432 | 393 | 430 | 23 | 18 | 78.2609 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 67.4944 | 52.3636 | 94.9227 | 82.7953 | 432 | 393 | 430 | 23 | 18 | 78.2609 | |
| jmaeng-gatk | SNP | tv | map_l250_m1_e0 | het | 70.8070 | 56.4633 | 94.9200 | 96.9245 | 1009 | 778 | 1009 | 54 | 1 | 1.8519 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | * | 95.6890 | 96.4725 | 94.9180 | 82.9590 | 2899 | 106 | 2895 | 155 | 39 | 25.1613 | |
| gduggal-snapfb | SNP | ti | map_siren | hetalt | 96.5517 | 98.2456 | 94.9153 | 82.4405 | 56 | 1 | 56 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.9857 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.1012 | 99.3902 | 94.9153 | 88.6973 | 163 | 1 | 112 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D16_PLUS | segdup | * | 94.8714 | 94.8276 | 94.9153 | 95.0833 | 55 | 3 | 56 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | het | 94.9153 | 94.9153 | 94.9153 | 85.9189 | 56 | 3 | 56 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | * | 95.7265 | 96.5517 | 94.9153 | 95.4334 | 56 | 2 | 56 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.7831 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 93.0748 | 91.3043 | 94.9153 | 95.7686 | 168 | 16 | 168 | 9 | 4 | 44.4444 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 93.3333 | 91.8033 | 94.9153 | 96.5547 | 112 | 10 | 112 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 69.5876 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 68.6170 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | het | 94.1176 | 93.3333 | 94.9153 | 96.5698 | 56 | 4 | 56 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | map_siren | * | 95.8840 | 96.8735 | 94.9146 | 68.0322 | 44494 | 1436 | 44271 | 2372 | 211 | 8.8955 | |