PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36301-36350 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I1_5 | func_cds | het | 97.5610 | 100.0000 | 95.2381 | 64.4068 | 59 | 0 | 60 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 95.2381 | 96.4103 | 0 | 0 | 20 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.2381 | 97.4729 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.5610 | 100.0000 | 95.2381 | 27.5862 | 21 | 0 | 20 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.7643 | 96.2963 | 95.2381 | 82.0896 | 26 | 1 | 80 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e0 | * | 93.0233 | 90.9091 | 95.2381 | 96.9208 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | * | 93.0233 | 90.9091 | 95.2381 | 97.0213 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.2381 | 95.2381 | 95.2381 | 89.9522 | 40 | 2 | 40 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m0_e0 | het | 96.8041 | 98.4267 | 95.2342 | 81.7798 | 8133 | 130 | 8133 | 407 | 98 | 24.0786 | |
| gduggal-snapvard | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 95.2328 | 73.0263 | 0 | 0 | 859 | 43 | 29 | 67.4419 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5261 | 91.8816 | 95.2305 | 60.9680 | 1211 | 107 | 1198 | 60 | 58 | 96.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | homalt | 97.4343 | 99.7438 | 95.2294 | 67.8023 | 1557 | 4 | 1557 | 78 | 76 | 97.4359 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.8694 | 94.5122 | 95.2294 | 59.8083 | 155 | 9 | 519 | 26 | 23 | 88.4615 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | * | 95.0781 | 94.9293 | 95.2273 | 91.7069 | 7582 | 405 | 7582 | 380 | 95 | 25.0000 | |
| astatham-gatk | INDEL | * | HG002compoundhet | * | 95.0088 | 94.7931 | 95.2256 | 62.9264 | 28400 | 1560 | 28282 | 1418 | 1407 | 99.2243 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.2339 | 99.3295 | 95.2250 | 57.6340 | 11407 | 77 | 11407 | 572 | 562 | 98.2517 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6165 | 96.0123 | 95.2239 | 86.1513 | 313 | 13 | 319 | 16 | 3 | 18.7500 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | * | 96.1418 | 97.0817 | 95.2199 | 92.6863 | 499 | 15 | 498 | 25 | 4 | 16.0000 | |
| cchapple-custom | SNP | tv | map_l125_m0_e0 | * | 95.8633 | 96.5164 | 95.2189 | 78.5014 | 6400 | 231 | 6393 | 321 | 56 | 17.4455 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.7857 | 94.3579 | 95.2175 | 45.4647 | 11205 | 670 | 11209 | 563 | 510 | 90.5861 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e0 | * | 95.0584 | 94.9017 | 95.2157 | 91.6500 | 7483 | 402 | 7483 | 376 | 93 | 24.7340 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.4986 | 91.8437 | 95.2143 | 47.2808 | 10202 | 906 | 16374 | 823 | 701 | 85.1762 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7990 | 98.4375 | 95.2141 | 86.5241 | 378 | 6 | 378 | 19 | 2 | 10.5263 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.3132 | 95.4134 | 95.2131 | 38.5261 | 4535 | 218 | 4535 | 228 | 107 | 46.9298 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.1270 | 87.3774 | 95.2128 | 60.8815 | 57102 | 8249 | 63963 | 3216 | 2822 | 87.7488 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.1270 | 87.3774 | 95.2128 | 60.8815 | 57102 | 8249 | 63963 | 3216 | 2822 | 87.7488 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e1 | het | 97.2241 | 99.3224 | 95.2126 | 76.7581 | 15830 | 108 | 15831 | 796 | 98 | 12.3116 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5795 | 66.8939 | 95.2119 | 92.0071 | 2944 | 1457 | 2943 | 148 | 6 | 4.0541 | |
| jlack-gatk | INDEL | * | map_siren | * | 96.8350 | 98.5155 | 95.2108 | 84.4494 | 7300 | 110 | 7316 | 368 | 36 | 9.7826 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 96.9768 | 98.8095 | 95.2108 | 87.6725 | 1826 | 22 | 1829 | 92 | 8 | 8.6957 | |
| qzeng-custom | SNP | tv | map_l125_m0_e0 | * | 81.4498 | 71.1657 | 95.2082 | 88.9716 | 4719 | 1912 | 4709 | 237 | 201 | 84.8101 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7226 | 94.2424 | 95.2077 | 70.8837 | 311 | 19 | 298 | 15 | 12 | 80.0000 | |
| ckim-dragen | INDEL | * | HG002compoundhet | het | 96.6766 | 98.1925 | 95.2069 | 77.0708 | 4020 | 74 | 3774 | 190 | 179 | 94.2105 | |
| ckim-vqsr | INDEL | * | HG002compoundhet | * | 93.9622 | 92.7503 | 95.2061 | 62.6940 | 27788 | 2172 | 27665 | 1393 | 1381 | 99.1385 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.9292 | 85.2071 | 95.2055 | 89.4101 | 432 | 75 | 417 | 21 | 10 | 47.6190 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 96.2092 | 97.2342 | 95.2055 | 85.6546 | 1125 | 32 | 1112 | 56 | 6 | 10.7143 | |
| mlin-fermikit | INDEL | * | HG002complexvar | homalt | 95.7600 | 96.3222 | 95.2043 | 55.1307 | 26033 | 994 | 25927 | 1306 | 1267 | 97.0138 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.3917 | 97.6114 | 95.2022 | 68.9543 | 47118 | 1153 | 98539 | 4966 | 2712 | 54.6114 | |
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | * | 94.8356 | 94.4731 | 95.2010 | 82.0124 | 11367 | 665 | 11367 | 573 | 270 | 47.1204 | |
| jpowers-varprowl | SNP | tv | segdup | het | 96.8798 | 98.6193 | 95.2007 | 93.8679 | 5214 | 73 | 5217 | 263 | 4 | 1.5209 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 92.1017 | 89.1985 | 95.2002 | 47.3849 | 13188 | 1597 | 14241 | 718 | 698 | 97.2145 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 94.6645 | 94.1361 | 95.1988 | 74.6771 | 899 | 56 | 1269 | 64 | 58 | 90.6250 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | het | 89.6413 | 84.6987 | 95.1965 | 90.0770 | 1954 | 353 | 1962 | 99 | 13 | 13.1313 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.7973 | 86.7868 | 95.1964 | 28.2652 | 1156 | 176 | 5767 | 291 | 281 | 96.5636 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | het | 97.2146 | 99.3218 | 95.1950 | 76.6930 | 15670 | 107 | 15671 | 791 | 98 | 12.3894 | |
| cchapple-custom | SNP | ti | map_l125_m0_e0 | het | 95.6528 | 96.1152 | 95.1947 | 80.1979 | 7942 | 321 | 7944 | 401 | 119 | 29.6758 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.5098 | 93.8352 | 95.1942 | 74.3325 | 1446 | 95 | 1446 | 73 | 39 | 53.4247 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 89.3443 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.7203 | 94.2529 | 95.1923 | 81.7287 | 574 | 35 | 495 | 25 | 17 | 68.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 90.4324 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |