PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36201-36250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.3784 | 95.4685 | 95.2885 | 77.7755 | 43631 | 2071 | 43726 | 2162 | 267 | 12.3497 | |
| bgallagher-sentieon | INDEL | D6_15 | segdup | * | 95.2880 | 95.2880 | 95.2880 | 93.7724 | 182 | 9 | 182 | 9 | 5 | 55.5556 | |
| ckim-dragen | INDEL | D6_15 | segdup | * | 95.2880 | 95.2880 | 95.2880 | 94.6959 | 182 | 9 | 182 | 9 | 5 | 55.5556 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e1 | homalt | 87.5932 | 81.0496 | 95.2862 | 90.4348 | 278 | 65 | 283 | 14 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4327 | 99.6801 | 95.2844 | 41.6647 | 4674 | 15 | 4708 | 233 | 3 | 1.2876 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.0524 | 98.8880 | 95.2837 | 61.3406 | 4802 | 54 | 4182 | 207 | 43 | 20.7729 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | het | 95.7346 | 96.1905 | 95.2830 | 96.8183 | 202 | 8 | 202 | 10 | 1 | 10.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8825 | 98.5366 | 95.2830 | 90.2349 | 202 | 3 | 202 | 10 | 7 | 70.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8825 | 98.5366 | 95.2830 | 90.2349 | 202 | 3 | 202 | 10 | 7 | 70.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.2830 | 95.2830 | 95.2830 | 95.7275 | 101 | 5 | 101 | 5 | 2 | 40.0000 | |
| ckim-dragen | INDEL | I1_5 | segdup | * | 97.2226 | 99.2446 | 95.2813 | 95.0536 | 1051 | 8 | 1050 | 52 | 5 | 9.6154 | |
| jlack-gatk | SNP | tv | map_siren | * | 97.3060 | 99.4187 | 95.2813 | 67.8334 | 45663 | 267 | 45655 | 2261 | 122 | 5.3958 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | * | 93.8573 | 92.4805 | 95.2757 | 55.2360 | 30255 | 2460 | 30130 | 1494 | 1377 | 92.1687 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1888 | 99.1803 | 95.2756 | 71.1364 | 484 | 4 | 484 | 24 | 19 | 79.1667 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m0_e0 | * | 96.4143 | 97.5806 | 95.2756 | 92.2773 | 484 | 12 | 484 | 24 | 3 | 12.5000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1888 | 99.1803 | 95.2756 | 95.1729 | 121 | 1 | 121 | 6 | 1 | 16.6667 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.5554 | 89.9881 | 95.2735 | 38.7245 | 28789 | 3203 | 28422 | 1410 | 1207 | 85.6028 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.1163 | 94.9599 | 95.2731 | 65.4635 | 3674 | 195 | 3628 | 180 | 177 | 98.3333 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | homalt | 87.6927 | 81.2317 | 95.2703 | 90.2632 | 277 | 64 | 282 | 14 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.6180 | 82.8379 | 95.2651 | 48.0962 | 3205 | 664 | 2857 | 142 | 132 | 92.9577 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0197 | 98.8406 | 95.2646 | 88.9606 | 341 | 4 | 342 | 17 | 1 | 5.8824 | |
| jlack-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.6584 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | * | 94.5581 | 93.8634 | 95.2632 | 87.2725 | 1086 | 71 | 1086 | 54 | 28 | 51.8519 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.8022 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | het | 95.2632 | 95.2632 | 95.2632 | 95.6049 | 181 | 9 | 181 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | het | 96.3746 | 97.5131 | 95.2625 | 88.9141 | 745 | 19 | 744 | 37 | 3 | 8.1081 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7613 | 94.2669 | 95.2609 | 72.9999 | 2006 | 122 | 1990 | 99 | 89 | 89.8990 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 76.8190 | 64.3595 | 95.2607 | 61.2844 | 623 | 345 | 1206 | 60 | 23 | 38.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0991 | 99.0099 | 95.2607 | 91.9833 | 200 | 2 | 201 | 10 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | * | 94.2413 | 93.2455 | 95.2586 | 34.8015 | 8421 | 610 | 8418 | 419 | 413 | 98.5680 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | het | 96.3552 | 97.4817 | 95.2545 | 71.3326 | 27677 | 715 | 27680 | 1379 | 599 | 43.4373 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | * | 96.2329 | 97.2318 | 95.2542 | 91.7736 | 281 | 8 | 281 | 14 | 2 | 14.2857 | |
| anovak-vg | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.1202 | 97.0035 | 95.2529 | 60.1354 | 53964 | 1667 | 55240 | 2753 | 1338 | 48.6015 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0142 | 90.8795 | 95.2517 | 63.6364 | 1674 | 168 | 1665 | 83 | 41 | 49.3976 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | het | 95.9987 | 96.7583 | 95.2510 | 80.3175 | 11969 | 401 | 11974 | 597 | 158 | 26.4657 | |
| ckim-gatk | SNP | * | map_l250_m0_e0 | het | 63.7809 | 47.9416 | 95.2507 | 98.3918 | 722 | 784 | 722 | 36 | 2 | 5.5556 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | het | 96.3818 | 97.5406 | 95.2502 | 79.8220 | 2221 | 56 | 2246 | 112 | 13 | 11.6071 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.2178 | 95.1859 | 95.2497 | 71.1485 | 31636 | 1600 | 37135 | 1852 | 568 | 30.6695 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4028 | 99.6568 | 95.2485 | 71.4664 | 1742 | 6 | 1744 | 87 | 49 | 56.3218 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 94.6939 | 94.1478 | 95.2463 | 35.4713 | 2204 | 137 | 2204 | 110 | 109 | 99.0909 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.5454 | 91.9051 | 95.2453 | 77.4805 | 28622 | 2521 | 28425 | 1419 | 235 | 16.5610 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.5454 | 91.9051 | 95.2453 | 77.4805 | 28622 | 2521 | 28425 | 1419 | 235 | 16.5610 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m1_e0 | * | 94.5370 | 93.8419 | 95.2425 | 86.5208 | 1021 | 67 | 1021 | 51 | 27 | 52.9412 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 87.7974 | 81.4329 | 95.2411 | 80.6685 | 7570 | 1726 | 3002 | 150 | 102 | 68.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | * | 93.3379 | 91.5109 | 95.2392 | 35.4681 | 8031 | 745 | 8042 | 402 | 334 | 83.0846 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | * | 89.2193 | 83.9161 | 95.2381 | 89.8795 | 120 | 23 | 120 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | func_cds | * | 94.1176 | 93.0233 | 95.2381 | 54.8387 | 40 | 3 | 40 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | * | 94.8905 | 94.5455 | 95.2381 | 86.0143 | 260 | 15 | 260 | 13 | 7 | 53.8462 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 93.0233 | 90.9091 | 95.2381 | 85.5172 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | tech_badpromoters | het | 95.0546 | 94.8718 | 95.2381 | 45.4545 | 37 | 2 | 40 | 2 | 1 | 50.0000 | |