PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35951-36000 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 96.6565 | 0 | 0 | 21 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 95.3077 | 95.1613 | 95.4545 | 87.8309 | 295 | 15 | 294 | 14 | 3 | 21.4286 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5775 | 97.7273 | 95.4545 | 93.6232 | 43 | 1 | 42 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 80.7692 | 70.0000 | 95.4545 | 88.0435 | 21 | 9 | 21 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 85.1927 | 76.9231 | 95.4545 | 76.5957 | 20 | 6 | 21 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 85.1927 | 76.9231 | 95.4545 | 78.0000 | 20 | 6 | 21 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.6744 | 100.0000 | 95.4545 | 31.2500 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9523 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002compoundhet | het | 91.1593 | 87.2340 | 95.4545 | 94.5679 | 41 | 6 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 93.9726 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.7115 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9492 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.4545 | 95.4545 | 95.4545 | 87.6404 | 21 | 1 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.3043 | 87.5000 | 95.4545 | 74.4186 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.7991 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 95.3975 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9595 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.4478 | 99.5261 | 95.4545 | 52.1739 | 210 | 1 | 210 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.4138 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.0548 | 88.8889 | 95.4545 | 78.8462 | 256 | 32 | 231 | 11 | 8 | 72.7273 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.8979 | 92.3913 | 95.4545 | 69.5502 | 85 | 7 | 84 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.3333 | 91.3043 | 95.4545 | 97.5528 | 42 | 4 | 42 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e0 | * | 95.4545 | 95.4545 | 95.4545 | 96.1131 | 21 | 1 | 21 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e1 | * | 95.4545 | 95.4545 | 95.4545 | 96.2069 | 21 | 1 | 21 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 88.9831 | 83.3333 | 95.4545 | 88.0435 | 20 | 4 | 21 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m0_e0 | het | 60.2871 | 44.0559 | 95.4545 | 98.5526 | 252 | 320 | 252 | 12 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9620 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m0_e0 | het | 51.2195 | 35.0000 | 95.4545 | 93.0380 | 21 | 39 | 21 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 64.6154 | 48.8372 | 95.4545 | 66.4122 | 42 | 44 | 42 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 95.4545 | 94.7743 | 0 | 0 | 42 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.1832 | 96.9231 | 95.4545 | 84.6512 | 63 | 2 | 63 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2267 | 95.0000 | 95.4545 | 93.3333 | 19 | 1 | 21 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | het | 96.4350 | 97.4359 | 95.4545 | 91.6031 | 38 | 1 | 42 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.8100 | 68.5714 | 95.4545 | 89.7674 | 24 | 11 | 21 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.4545 | 95.4545 | 95.4545 | 84.7222 | 21 | 1 | 21 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.7143 | 77.7778 | 95.4545 | 96.1268 | 21 | 6 | 21 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.5714 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 91.3043 | 87.5000 | 95.4545 | 98.3321 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | homalt | 96.1786 | 96.9145 | 95.4537 | 57.9255 | 10271 | 327 | 10183 | 485 | 469 | 96.7010 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | het | 84.1017 | 75.1633 | 95.4530 | 91.0507 | 5523 | 1825 | 5521 | 263 | 7 | 2.6616 | |
| gduggal-bwavard | SNP | * | map_siren | het | 96.2598 | 97.0810 | 95.4524 | 69.7950 | 88335 | 2656 | 87233 | 4156 | 368 | 8.8547 | |
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | het | 83.3948 | 74.0426 | 95.4512 | 90.5818 | 5143 | 1803 | 5141 | 245 | 6 | 2.4490 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.6232 | 99.8976 | 95.4501 | 41.3150 | 1951 | 2 | 1951 | 93 | 92 | 98.9247 | |
| asubramanian-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 93.8487 | 92.3001 | 95.4501 | 48.4274 | 935 | 78 | 986 | 47 | 45 | 95.7447 | |
| gduggal-bwavard | SNP | * | map_l100_m1_e0 | * | 96.4277 | 97.4269 | 95.4487 | 73.9277 | 70540 | 1863 | 69564 | 3317 | 236 | 7.1149 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | * | 95.6975 | 95.9477 | 95.4486 | 93.6441 | 734 | 31 | 734 | 35 | 5 | 14.2857 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | * | 97.5383 | 99.7218 | 95.4485 | 79.1599 | 11470 | 32 | 11408 | 544 | 14 | 2.5735 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.4182 | 95.3879 | 95.4484 | 71.2860 | 9245 | 447 | 9143 | 436 | 182 | 41.7431 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 96.8806 | 98.3570 | 95.4480 | 86.8027 | 1317 | 22 | 1321 | 63 | 6 | 9.5238 | |
| bgallagher-sentieon | INDEL | D6_15 | HG002compoundhet | * | 94.8572 | 94.2753 | 95.4464 | 36.1821 | 8514 | 517 | 8510 | 406 | 403 | 99.2611 | |