PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35751-35800 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.0190 | 98.4844 | 95.5966 | 46.9536 | 6173 | 95 | 6209 | 286 | 37 | 12.9371 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.1239 | 92.6980 | 95.5943 | 77.1597 | 3745 | 295 | 3450 | 159 | 125 | 78.6164 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2600 | 94.9290 | 95.5934 | 73.1707 | 5148 | 275 | 5163 | 238 | 158 | 66.3866 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2600 | 94.9290 | 95.5934 | 73.1707 | 5148 | 275 | 5163 | 238 | 158 | 66.3866 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 96.4056 | 97.2318 | 95.5932 | 92.0227 | 281 | 8 | 282 | 13 | 1 | 7.6923 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.6444 | 99.7860 | 95.5928 | 54.4932 | 2798 | 6 | 2798 | 129 | 127 | 98.4496 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.8600 | 98.1613 | 95.5927 | 59.3604 | 6620 | 124 | 6572 | 303 | 63 | 20.7921 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.6020 | 89.7937 | 95.5916 | 62.8768 | 1654 | 188 | 1648 | 76 | 46 | 60.5263 | |
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | * | 93.4351 | 91.3742 | 95.5910 | 34.6214 | 8019 | 757 | 8022 | 370 | 313 | 84.5946 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.3550 | 97.1312 | 95.5910 | 44.3893 | 7144 | 211 | 7068 | 326 | 14 | 4.2945 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.3969 | 99.2733 | 95.5900 | 55.8480 | 3142 | 23 | 3143 | 145 | 133 | 91.7241 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | * | 96.3013 | 97.0233 | 95.5899 | 79.4079 | 11017 | 338 | 11011 | 508 | 83 | 16.3386 | |
| ckim-gatk | SNP | * | map_siren | hetalt | 87.2483 | 80.2469 | 95.5882 | 82.7848 | 65 | 16 | 65 | 3 | 2 | 66.6667 | |
| ckim-gatk | SNP | tv | map_siren | hetalt | 87.2483 | 80.2469 | 95.5882 | 82.7848 | 65 | 16 | 65 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | segdup | hetalt | 51.6497 | 35.3846 | 95.5882 | 96.8649 | 46 | 84 | 65 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 81.4336 | 70.9302 | 95.5882 | 72.4696 | 61 | 25 | 65 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | * | tech_badpromoters | * | 89.4635 | 84.0764 | 95.5882 | 39.8230 | 132 | 25 | 130 | 6 | 6 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.3824 | 85.7143 | 95.5882 | 88.0806 | 402 | 67 | 390 | 18 | 8 | 44.4444 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.4330 | 91.3758 | 95.5850 | 59.8048 | 445 | 42 | 433 | 20 | 5 | 25.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0119 | 68.8026 | 95.5844 | 61.7961 | 1471 | 667 | 1472 | 68 | 5 | 7.3529 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 91.9356 | 88.5572 | 95.5819 | 56.9174 | 890 | 115 | 887 | 41 | 15 | 36.5854 | |
| ckim-dragen | SNP | * | map_l250_m1_e0 | het | 96.2090 | 96.8454 | 95.5809 | 90.7991 | 4605 | 150 | 4607 | 213 | 14 | 6.5728 | |
| ckim-dragen | INDEL | I6_15 | segdup | * | 97.1910 | 98.8571 | 95.5801 | 93.3013 | 173 | 2 | 173 | 8 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | map_l150_m2_e0 | het | 83.5782 | 74.2554 | 95.5781 | 89.7806 | 5385 | 1867 | 5382 | 249 | 204 | 81.9277 | |
| qzeng-custom | SNP | * | map_l150_m2_e0 | het | 81.6474 | 71.2611 | 95.5780 | 89.7912 | 14347 | 5786 | 14222 | 658 | 550 | 83.5866 | |
| gduggal-bwafb | INDEL | I1_5 | HG002complexvar | hetalt | 89.3217 | 83.8355 | 95.5763 | 80.3162 | 1447 | 279 | 821 | 38 | 37 | 97.3684 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9849 | 94.4009 | 95.5762 | 69.0899 | 9509 | 564 | 9355 | 433 | 393 | 90.7621 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.1858 | 63.3364 | 95.5758 | 45.0405 | 1363 | 789 | 1361 | 63 | 51 | 80.9524 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.1858 | 63.3364 | 95.5758 | 44.5914 | 1363 | 789 | 1361 | 63 | 54 | 85.7143 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5752 | 95.5752 | 95.5752 | 96.0900 | 108 | 5 | 108 | 5 | 2 | 40.0000 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | het | 83.6864 | 74.4284 | 95.5746 | 89.7620 | 5469 | 1879 | 5464 | 253 | 208 | 82.2134 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | * | 95.9578 | 96.3441 | 95.5746 | 86.0998 | 1344 | 51 | 1339 | 62 | 13 | 20.9677 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5920 | 66.7348 | 95.5729 | 91.8237 | 2937 | 1464 | 2936 | 136 | 8 | 5.8824 | |
| ckim-isaac | INDEL | I1_5 | HG002complexvar | het | 94.3344 | 93.1277 | 95.5727 | 50.4026 | 16939 | 1250 | 16838 | 780 | 423 | 54.2308 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | het | 66.7367 | 51.2690 | 95.5696 | 76.0968 | 303 | 288 | 302 | 14 | 4 | 28.5714 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | * | 92.9132 | 90.4018 | 95.5681 | 83.3799 | 17820 | 1892 | 17833 | 827 | 469 | 56.7110 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.2027 | 98.8950 | 95.5674 | 89.4362 | 537 | 6 | 539 | 25 | 3 | 12.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2118 | 90.9722 | 95.5645 | 79.3505 | 262 | 26 | 237 | 11 | 7 | 63.6364 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.3317 | 97.1116 | 95.5642 | 35.5358 | 2219 | 66 | 2219 | 103 | 98 | 95.1456 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | * | 93.2502 | 91.0465 | 95.5633 | 81.8317 | 14582 | 1434 | 14582 | 677 | 351 | 51.8464 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.3524 | 95.1444 | 95.5614 | 69.5669 | 725 | 37 | 732 | 34 | 14 | 41.1765 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002complexvar | * | 93.9813 | 92.4528 | 95.5612 | 63.5376 | 1519 | 124 | 1507 | 70 | 64 | 91.4286 | |
| qzeng-custom | SNP | ti | map_l150_m2_e0 | het | 80.5235 | 69.5753 | 95.5605 | 89.8900 | 8962 | 3919 | 8933 | 415 | 349 | 84.0964 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | het | 95.8056 | 96.0533 | 95.5592 | 83.3978 | 7058 | 290 | 7058 | 328 | 76 | 23.1707 | |
| cchapple-custom | SNP | ti | map_l100_m0_e0 | het | 96.2084 | 96.8676 | 95.5581 | 74.9532 | 13545 | 438 | 13553 | 630 | 172 | 27.3016 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6539 | 97.7778 | 95.5556 | 94.5055 | 44 | 1 | 43 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.5055 | 93.4783 | 95.5556 | 67.1533 | 43 | 3 | 43 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4887 | 91.5094 | 95.5556 | 87.2521 | 97 | 9 | 86 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.2085 | 43 | 1 | 43 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 91.7496 | 88.2353 | 95.5556 | 85.3420 | 45 | 6 | 43 | 2 | 1 | 50.0000 | |