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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3451-3500 / 86044 show all
jmaeng-gatkSNP*HG002compoundhethetalt
98.9449
97.9118
100.0000
22.9224
8441884400
jmaeng-gatkSNP*func_cdshetalt
100.0000
100.0000
100.0000
64.2857
1001000
jmaeng-gatkSNP*func_cdshomalt
99.8852
99.7707
100.0000
21.6496
696316696300
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.3333
1211200
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.1176
1501500
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9067
99.8135
100.0000
43.7478
16063160600
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.0358
22502225000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
57.4376
13821138200
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.6744
95.4545
100.0000
91.0790
105510500
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.8776
30300
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.1176
1501500
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.8333
10100
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
93.6709
88.0952
100.0000
97.5610
3753700
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200het
92.0000
85.1852
100.0000
97.9860
2342300
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
96.5517
93.3333
100.0000
96.2466
1411400
jmaeng-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
50500
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200het
95.9184
92.1569
100.0000
92.8299
9489400
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.8525
90900
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.1049
70700
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.2973
20200
jmaeng-gatkSNP*map_l100_m0_e0hetalt
72.0000
56.2500
100.0000
93.2331
97900
jmaeng-gatkSNP*map_l125_m0_e0hetalt
36.3636
22.2222
100.0000
98.3051
27200
jmaeng-gatkSNP*map_l125_m1_e0hetalt
77.5510
63.3333
100.0000
91.8103
19111900
jmaeng-gatkSNP*map_l125_m2_e0hetalt
77.5510
63.3333
100.0000
93.0909
19111900
jmaeng-gatkSNP*map_l125_m2_e1hetalt
77.5510
63.3333
100.0000
93.0909
19111900
jmaeng-gatkSNP*map_l150_m0_e0hetalt
50.0000
33.3333
100.0000
99.0476
12100
jmaeng-gatkSNP*map_l150_m1_e0hetalt
70.9677
55.0000
100.0000
94.4444
1191100
jmaeng-gatkSNP*map_l150_m2_e0hetalt
70.9677
55.0000
100.0000
95.2381
1191100
jmaeng-gatkSNP*map_l150_m2_e1hetalt
70.9677
55.0000
100.0000
95.2381
1191100
jmaeng-gatkSNP*map_l250_m2_e0hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNP*map_l250_m2_e1hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNP*segduphetalt
100.0000
100.0000
100.0000
98.5685
70700
jmaeng-gatkSNP*tech_badpromotershet
98.0132
96.1039
100.0000
48.2517
7437400
jmaeng-gatkSNPtiHG002compoundhethetalt
98.9529
97.9275
100.0000
22.2222
5671256700
jmaeng-gatkSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
61.9048
80800
jmaeng-gatkSNPtifunc_cdshomalt
99.9051
99.8104
100.0000
20.1062
526510526500
jmaeng-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7543
99.5098
100.0000
59.5752
12186121800
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
88.6364
51500
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.7711
1201200
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8668
99.7340
100.0000
42.7189
11253112500
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9659
99.9318
100.0000
43.5670
14651146500
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
46.9388
858085800
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.7778
95.6522
100.0000
90.5983
6636600