PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34901-34950 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | ti | HG002compoundhet | hetalt | 97.8831 | 99.8273 | 96.0133 | 26.9417 | 578 | 1 | 578 | 24 | 6 | 25.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.2407 | 94.4809 | 96.0129 | 51.7704 | 13969 | 816 | 13967 | 580 | 530 | 91.3793 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.7656 | 99.5841 | 96.0122 | 62.9104 | 20115 | 84 | 20152 | 837 | 723 | 86.3799 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.6924 | 66.6667 | 96.0114 | 97.4973 | 2 | 1 | 337 | 14 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m0_e0 | het | 64.8227 | 48.9293 | 96.0084 | 98.4090 | 457 | 477 | 457 | 19 | 2 | 10.5263 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 51.7828 | 35.4521 | 96.0081 | 54.3492 | 2415 | 4397 | 2862 | 119 | 117 | 98.3193 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2966 | 98.6207 | 96.0076 | 71.3508 | 429 | 6 | 505 | 21 | 6 | 28.5714 | |
| jpowers-varprowl | SNP | * | segdup | het | 97.3794 | 98.7931 | 96.0056 | 92.7629 | 17108 | 209 | 17113 | 712 | 6 | 0.8427 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.5341 | 99.1135 | 96.0043 | 33.9044 | 559 | 5 | 4445 | 185 | 173 | 93.5135 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.0939 | 98.2086 | 96.0042 | 48.3222 | 4605 | 84 | 4613 | 192 | 8 | 4.1667 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.2598 | 94.5285 | 96.0025 | 68.9889 | 29439 | 1704 | 29443 | 1226 | 756 | 61.6639 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.2598 | 94.5285 | 96.0025 | 68.9889 | 29439 | 1704 | 29443 | 1226 | 756 | 61.6639 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | * | 84.3510 | 75.2217 | 96.0024 | 42.9312 | 1612 | 531 | 1585 | 66 | 64 | 96.9697 | |
| ckim-dragen | SNP | tv | map_l250_m2_e1 | het | 96.2700 | 96.5394 | 96.0020 | 91.4117 | 1897 | 68 | 1897 | 79 | 5 | 6.3291 | |
| ckim-gatk | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.7085 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.1198 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 89.3162 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2266 | 98.4848 | 96.0000 | 75.6006 | 325 | 5 | 312 | 13 | 7 | 53.8462 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 94.1176 | 92.3077 | 96.0000 | 96.2179 | 24 | 2 | 24 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.6866 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0495 | 94.1176 | 96.0000 | 92.5540 | 96 | 6 | 96 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 94.1176 | 92.3077 | 96.0000 | 85.7955 | 24 | 2 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 69.0769 | 53.9474 | 96.0000 | 65.2241 | 205 | 175 | 216 | 9 | 8 | 88.8889 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | het | 95.9166 | 95.8333 | 96.0000 | 94.4196 | 23 | 1 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | func_cds | het | 97.9592 | 100.0000 | 96.0000 | 37.5000 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.9592 | 95.9184 | 96.0000 | 82.4561 | 47 | 2 | 48 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 43.9242 | 28.4768 | 96.0000 | 65.0350 | 43 | 108 | 48 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | * | 92.3077 | 88.8889 | 96.0000 | 94.3439 | 24 | 3 | 24 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | homalt | 73.1839 | 59.1304 | 96.0000 | 96.3262 | 68 | 47 | 96 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | * | tech_badpromoters | * | 96.0263 | 96.0526 | 96.0000 | 50.9804 | 73 | 3 | 72 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.4093 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.9592 | 100.0000 | 96.0000 | 88.4793 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m1_e0 | * | 95.2545 | 94.5205 | 96.0000 | 91.2178 | 69 | 4 | 72 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 97.9592 | 100.0000 | 96.0000 | 97.8485 | 24 | 0 | 24 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | het | 97.9592 | 100.0000 | 96.0000 | 91.6667 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 48.9796 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.0495 | 94.1176 | 96.0000 | 76.9231 | 144 | 9 | 144 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.5224 | 95.0495 | 96.0000 | 93.4037 | 96 | 5 | 96 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.9592 | 100.0000 | 96.0000 | 87.9808 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.7085 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 88.3178 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | * | 94.1176 | 92.3077 | 96.0000 | 96.2179 | 24 | 2 | 24 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.6866 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.0734 | 81.3559 | 96.0000 | 63.2353 | 48 | 11 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 97.5610 | 99.1736 | 96.0000 | 96.2930 | 120 | 1 | 120 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.9592 | 100.0000 | 96.0000 | 91.9094 | 24 | 0 | 24 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.1212 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.1260 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.9379 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 93.1319 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |