PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3351-3400 / 86044 show all
jmaeng-gatkINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
20200
jmaeng-gatkINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
0.0000
20200
jmaeng-gatkINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
31.2139
119011900
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8605
10100
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.2963
10100
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.6129
84.5238
100.0000
54.1935
71137100
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8559
10100
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.8333
10100
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.8140
91.9643
100.0000
71.8579
103910300
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9088
99.8179
100.0000
81.3161
548154800
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
78.6517
5735700
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
89.9913
81.8038
100.0000
35.7482
51711554100
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
89.7959
81.4815
100.0000
97.5207
225300
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9933
10100
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9837
10100
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
96.9945
94.1645
100.0000
38.4968
106566107200
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
94.9153
90.3226
100.0000
36.0000
1962120800
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
97.5450
95.2077
100.0000
30.5361
2981529800
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
97.7778
95.6522
100.0000
12.0000
2212200
jmaeng-gatkINDELI1_5map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
93.5252
90900
jmaeng-gatkINDELI1_5map_l100_m1_e0hetalt
96.4706
93.1818
100.0000
88.7671
4134100
jmaeng-gatkINDELI1_5map_l100_m2_e0hetalt
96.4706
93.1818
100.0000
89.6465
4134100
jmaeng-gatkINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.6296
4234200
jmaeng-gatkINDELI1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.0784
40400
jmaeng-gatkINDELI1_5map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
93.3071
1701700
jmaeng-gatkINDELI1_5map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
93.4483
1901900
jmaeng-gatkINDELI1_5map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
93.5593
1901900
jmaeng-gatkINDELI1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
96.0000
30300
jmaeng-gatkINDELI1_5map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
95.3125
90900
jmaeng-gatkINDELI1_5map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
95.9821
90900
jmaeng-gatkINDELI1_5map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
95.6332
1001000
jmaeng-gatkINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.0392
20200
jmaeng-gatkINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.4127
20200
jmaeng-gatkINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.4375
20200
jmaeng-gatkINDELI1_5map_sirenhetalt
95.3271
91.0714
100.0000
86.8047
1021010200
jmaeng-gatkINDELI1_5segduphetalt
95.6522
91.6667
100.0000
95.9750
4444500
jmaeng-gatkINDELI1_5tech_badpromoters*
100.0000
100.0000
100.0000
53.1915
2202200
jmaeng-gatkINDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
42.8571
80800
jmaeng-gatkINDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
jmaeng-gatkINDELI1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
58.0645
1301300
jmaeng-gatkINDELI6_15HG002complexvarhetalt
95.0665
90.5969
100.0000
53.0086
1108115114800
jmaeng-gatkINDELI6_15HG002compoundhethetalt
95.7568
91.8590
100.0000
28.4755
7842695788200
jmaeng-gatkINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
0.0000
31300
jmaeng-gatkINDELI6_15func_cdshomalt
100.0000
100.0000
100.0000
42.3077
1501500
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.8210
86.6038
100.0000
44.7917
4597147700
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
89.0909
80.3279
100.0000
51.0000
49124900
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.1453
98.3051
100.0000
74.5985
174317400
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
96.3415
92.9412
100.0000
54.5455
7968000
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
98.9562
97.9339
100.0000
69.3299
237523800
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5885
99.1803
100.0000
71.9258
121112100