PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33501-33550 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | * | 98.1324 | 99.6131 | 96.6952 | 78.1519 | 19310 | 75 | 18784 | 642 | 22 | 3.4268 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2345 | 95.7792 | 96.6942 | 67.4731 | 590 | 26 | 585 | 20 | 16 | 80.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6942 | 96.6942 | 96.6942 | 95.4167 | 117 | 4 | 117 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.9540 | 95.2267 | 96.6924 | 48.5132 | 13127 | 658 | 13126 | 449 | 442 | 98.4410 | |
| ckim-vqsr | INDEL | D16_PLUS | * | het | 97.9651 | 99.2719 | 96.6923 | 79.4267 | 3136 | 23 | 2894 | 99 | 69 | 69.6970 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2332 | 99.8240 | 96.6922 | 56.9130 | 5671 | 10 | 5671 | 194 | 193 | 99.4845 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.7826 | 98.8983 | 96.6918 | 85.1220 | 10682 | 119 | 10756 | 368 | 69 | 18.7500 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.2716 | 99.9044 | 96.6913 | 55.0844 | 8358 | 8 | 8358 | 286 | 283 | 98.9510 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1609 | 95.6364 | 96.6912 | 87.6307 | 263 | 12 | 263 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | SNP | * | map_l100_m0_e0 | het | 85.9916 | 77.4251 | 96.6894 | 86.7577 | 16418 | 4787 | 16414 | 562 | 45 | 8.0071 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8328 | 99.0038 | 96.6891 | 76.0765 | 3876 | 39 | 3884 | 133 | 2 | 1.5038 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3978 | 94.1426 | 96.6870 | 72.1399 | 1109 | 69 | 1109 | 38 | 29 | 76.3158 | |
| jli-custom | INDEL | * | map_l250_m2_e1 | * | 96.5414 | 96.3964 | 96.6867 | 95.6252 | 321 | 12 | 321 | 11 | 4 | 36.3636 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | het | 96.5230 | 96.3606 | 96.6860 | 89.4465 | 1165 | 44 | 1167 | 40 | 4 | 10.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.9269 | 85.8170 | 96.6839 | 77.1395 | 1313 | 217 | 1312 | 45 | 41 | 91.1111 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.9269 | 85.8170 | 96.6839 | 77.1395 | 1313 | 217 | 1312 | 45 | 41 | 91.1111 | |
| gduggal-snapfb | SNP | tv | map_siren | het | 97.7974 | 98.9374 | 96.6834 | 63.5849 | 28305 | 304 | 28306 | 971 | 266 | 27.3944 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 76.1905 | 62.8659 | 96.6825 | 50.9872 | 408 | 241 | 408 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e1 | * | 97.8230 | 98.9914 | 96.6819 | 73.9531 | 25028 | 255 | 25029 | 859 | 138 | 16.0652 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | het | 97.5150 | 98.3626 | 96.6819 | 90.6743 | 841 | 14 | 845 | 29 | 4 | 13.7931 | |
| qzeng-custom | SNP | tv | map_l150_m2_e0 | * | 82.9982 | 72.7081 | 96.6811 | 87.1519 | 8256 | 3099 | 8244 | 283 | 238 | 84.0989 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | * | 97.8210 | 98.9893 | 96.6799 | 73.9056 | 24780 | 253 | 24781 | 851 | 137 | 16.0987 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | * | 95.9707 | 95.2727 | 96.6790 | 89.6919 | 262 | 13 | 262 | 9 | 2 | 22.2222 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.0419 | 95.4134 | 96.6787 | 32.0948 | 4535 | 218 | 4541 | 156 | 154 | 98.7179 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | het | 84.1292 | 74.4636 | 96.6784 | 86.6172 | 22071 | 7569 | 21888 | 752 | 615 | 81.7819 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | * | 96.0396 | 95.4098 | 96.6777 | 99.6478 | 291 | 14 | 291 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | * | 96.0396 | 95.4098 | 96.6777 | 83.6945 | 291 | 14 | 291 | 10 | 4 | 40.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1234 | 99.6134 | 96.6774 | 60.9972 | 27571 | 107 | 26129 | 898 | 85 | 9.4655 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | * | 96.3445 | 96.0141 | 96.6772 | 77.8313 | 19897 | 826 | 19901 | 684 | 351 | 51.3158 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | * | 96.3855 | 96.0961 | 96.6767 | 99.5648 | 320 | 13 | 320 | 11 | 3 | 27.2727 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | * | 96.3855 | 96.0961 | 96.6767 | 99.5385 | 320 | 13 | 320 | 11 | 3 | 27.2727 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 78.4458 | 66.0000 | 96.6764 | 83.1355 | 1980 | 1020 | 1978 | 68 | 17 | 25.0000 | |
| jlack-gatk | SNP | * | map_siren | * | 98.0143 | 99.3920 | 96.6743 | 64.0744 | 145339 | 889 | 145316 | 4999 | 358 | 7.1614 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | het | 96.9210 | 97.1703 | 96.6729 | 76.0613 | 15487 | 451 | 15487 | 533 | 100 | 18.7617 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | homalt | 96.9786 | 97.2868 | 96.6724 | 87.1688 | 753 | 21 | 1133 | 39 | 35 | 89.7436 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | * | 83.1087 | 72.8830 | 96.6721 | 87.1352 | 8383 | 3119 | 8366 | 288 | 243 | 84.3750 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.4907 | 96.3100 | 96.6721 | 79.6867 | 1305 | 50 | 1191 | 41 | 29 | 70.7317 | |
| jmaeng-gatk | SNP | * | map_l125_m1_e0 | het | 88.1536 | 81.0158 | 96.6706 | 86.7253 | 23002 | 5390 | 22996 | 792 | 51 | 6.4394 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | * | 97.5510 | 98.4482 | 96.6701 | 79.2964 | 30134 | 475 | 30134 | 1038 | 222 | 21.3873 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.0150 | 95.3702 | 96.6686 | 70.3632 | 4882 | 237 | 4875 | 168 | 149 | 88.6905 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | * | 96.3262 | 95.9877 | 96.6670 | 77.7511 | 19689 | 823 | 19693 | 679 | 349 | 51.3991 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 92.7457 | 89.1304 | 96.6667 | 92.9742 | 41 | 5 | 58 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.3728 | 84.8485 | 96.6667 | 61.5385 | 28 | 5 | 29 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | hetalt | 80.5556 | 69.0476 | 96.6667 | 90.4762 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.0841 | 86.1111 | 96.6667 | 86.3014 | 31 | 5 | 29 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 96.6667 | 94.6043 | 0 | 0 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 96.6667 | 95.6927 | 0 | 0 | 58 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.5472 | 80.0000 | 96.6667 | 61.0390 | 28 | 7 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | homalt | 90.6250 | 85.2941 | 96.6667 | 84.5361 | 29 | 5 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.5672 | 78.3784 | 96.6667 | 70.5882 | 29 | 8 | 29 | 1 | 1 | 100.0000 | |