PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 63 64 65 66 67 68 69 70 71 ... 1720 1721 » 3301-3350 / 86044 show all
jmaeng-gatk	INDEL	D6_15	segdup	hetalt	93.4783	87.7551	100.0000	90.8898	43	6	43	0	0
jmaeng-gatk	INDEL	D6_15	tech_badpromoters	*	100.0000	100.0000	100.0000	51.4286	17	0	17	0	0
jmaeng-gatk	INDEL	D6_15	tech_badpromoters	het	100.0000	100.0000	100.0000	52.3810	10	0	10	0	0
jmaeng-gatk	INDEL	D6_15	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	1	0	1	0	0
jmaeng-gatk	INDEL	D6_15	tech_badpromoters	homalt	100.0000	100.0000	100.0000	53.8462	6	0	6	0	0
jmaeng-gatk	INDEL	I16_PLUS	HG002complexvar	het	99.0895	98.1955	100.0000	64.9055	653	12	631	0	0
jmaeng-gatk	INDEL	I16_PLUS	func_cds	*	95.6522	91.6667	100.0000	77.5510	11	1	11	0	0
jmaeng-gatk	INDEL	I16_PLUS	func_cds	het	100.0000	100.0000	100.0000	70.0000	9	0	9	0	0
jmaeng-gatk	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	88.2353	2	0	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.1677	87.2093	100.0000	76.7908	75	11	81	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	97.1429	94.4444	100.0000	83.4783	17	1	19	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.5915	97.2222	100.0000	80.9259	105	3	103	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.0588	94.2857	100.0000	76.1905	33	2	35	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4350	98.8764	100.0000	76.3441	88	1	88	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	75.5760	53	0	53	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.4359	95.0000	100.0000	67.2414	19	1	19	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	83.5052	16	0	16	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.7431	84.7458	100.0000	72.5389	50	9	53	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	66.6667	50.0000	100.0000	66.6667	1	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	100.0000	100.0000	100.0000	88.5496	15	0	15	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	96.7552	93.7143	100.0000	65.3445	164	11	166	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	89.3617	80.7692	100.0000	91.3934	21	5	21	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	90.4762	82.6087	100.0000	74.0741	19	4	21	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	100.0000	100.0000	100.0000	67.5000	13	0	13	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	83.6735	8	0	8	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	66.6667	50.0000	100.0000	85.7143	2	2	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	91.6667	1	0	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m0_e0	homalt	100.0000	100.0000	100.0000	98.5915	2	0	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m1_e0	hetalt	80.0000	66.6667	100.0000	93.7500	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m2_e0	hetalt	80.0000	66.6667	100.0000	94.2857	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m2_e1	hetalt	80.0000	66.6667	100.0000	94.4444	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	87.5000	1	0	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	98.4252	2	0	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m1_e0	hetalt	80.0000	66.6667	100.0000	91.3043	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m1_e0	homalt	100.0000	100.0000	100.0000	98.3333	3	0	3	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m2_e0	hetalt	80.0000	66.6667	100.0000	92.0000	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m2_e1	hetalt	80.0000	66.6667	100.0000	92.0000	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	83.3333	1	0	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m0_e0	homalt	100.0000	100.0000	100.0000	99.0826	1	0	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m1_e0	hetalt	66.6667	50.0000	100.0000	94.1176	1	1	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m1_e0	homalt	100.0000	100.0000	100.0000	98.0645	3	0	3	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m2_e0	hetalt	66.6667	50.0000	100.0000	94.4444	1	1	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m2_e0	homalt	100.0000	100.0000	100.0000	98.2036	3	0	3	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m2_e1	hetalt	66.6667	50.0000	100.0000	94.4444	1	1	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m2_e1	homalt	100.0000	100.0000	100.0000	98.2036	3	0	3	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_siren	hetalt	96.7742	93.7500	100.0000	85.5856	15	1	16	0	0
jmaeng-gatk	INDEL	I16_PLUS	segdup	hetalt	100.0000	100.0000	100.0000	97.2028	4	0	4	0	0
jmaeng-gatk	INDEL	I16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	71.4286	4	0	4	0	0
jmaeng-gatk	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	71.4286	2	0	2	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge