PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 65.1685 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.1122 | 87.8788 | 96.7742 | 59.7403 | 29 | 4 | 30 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 59.0289 | 42.4658 | 96.7742 | 72.0721 | 31 | 42 | 30 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | het | 43.7956 | 28.3019 | 96.7742 | 87.6984 | 30 | 76 | 30 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.3452 | 92.0365 | 96.7728 | 58.9950 | 2219 | 192 | 2219 | 74 | 70 | 94.5946 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | het | 98.1718 | 99.6126 | 96.7721 | 75.4925 | 28282 | 110 | 27402 | 914 | 28 | 3.0635 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | het | 97.3715 | 97.9784 | 96.7720 | 88.9838 | 2908 | 60 | 2908 | 97 | 2 | 2.0619 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | * | 97.8612 | 98.9756 | 96.7717 | 72.1277 | 24250 | 251 | 24251 | 809 | 135 | 16.6873 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2882 | 97.8105 | 96.7714 | 71.7102 | 5718 | 128 | 5665 | 189 | 174 | 92.0635 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2882 | 97.8105 | 96.7714 | 71.7102 | 5718 | 128 | 5665 | 189 | 174 | 92.0635 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.7595 | 98.7696 | 96.7698 | 62.5065 | 27615 | 344 | 27711 | 925 | 281 | 30.3784 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.8782 | 93.0607 | 96.7682 | 51.4476 | 20706 | 1544 | 21469 | 717 | 639 | 89.1213 | |
| qzeng-custom | SNP | ti | map_l150_m1_e0 | * | 79.6789 | 67.7202 | 96.7669 | 86.5194 | 13349 | 6363 | 13259 | 443 | 380 | 85.7788 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.2208 | 91.8058 | 96.7664 | 60.5925 | 1210 | 108 | 1197 | 40 | 39 | 97.5000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.8036 | 94.8601 | 96.7661 | 44.2918 | 5389 | 292 | 5416 | 181 | 176 | 97.2376 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.3878 | 94.0484 | 96.7658 | 60.9497 | 1517 | 96 | 1496 | 50 | 29 | 58.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | het | 98.1728 | 99.6214 | 96.7658 | 76.7357 | 29207 | 111 | 28304 | 946 | 28 | 2.9598 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4506 | 61.8308 | 96.7658 | 90.3686 | 4100 | 2531 | 4099 | 137 | 8 | 5.8394 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.3814 | 92.1127 | 96.7647 | 63.8170 | 981 | 84 | 987 | 33 | 27 | 81.8182 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | * | 92.1174 | 87.8960 | 96.7646 | 96.1178 | 3246 | 447 | 3260 | 109 | 17 | 15.5963 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.8504 | 59.7109 | 96.7642 | 46.8551 | 2189 | 1477 | 2183 | 73 | 54 | 73.9726 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e1 | * | 92.1115 | 87.8860 | 96.7638 | 96.1058 | 3301 | 455 | 3319 | 111 | 17 | 15.3153 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | * | 96.9542 | 97.1463 | 96.7628 | 75.1056 | 45855 | 1347 | 45852 | 1534 | 347 | 22.6206 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | het | 97.4111 | 98.0685 | 96.7625 | 68.1401 | 30362 | 598 | 30366 | 1016 | 436 | 42.9134 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.7969 | 96.8324 | 96.7615 | 60.7624 | 2415 | 79 | 2450 | 82 | 32 | 39.0244 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.4564 | 98.1618 | 96.7610 | 58.8376 | 16127 | 302 | 16132 | 540 | 515 | 95.3704 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | het | 97.6001 | 98.4547 | 96.7603 | 91.1986 | 892 | 14 | 896 | 30 | 4 | 13.3333 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.1232 | 95.4955 | 96.7593 | 64.9351 | 212 | 10 | 209 | 7 | 4 | 57.1429 | |
| gduggal-snapfb | SNP | tv | segdup | het | 98.0225 | 99.3191 | 96.7593 | 93.1540 | 5251 | 36 | 5255 | 176 | 3 | 1.7046 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.8607 | 93.0351 | 96.7593 | 72.4507 | 5677 | 425 | 6509 | 218 | 163 | 74.7706 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.0102 | 95.2734 | 96.7586 | 52.9962 | 5785 | 287 | 5791 | 194 | 179 | 92.2680 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3253 | 93.9349 | 96.7576 | 72.9412 | 1270 | 82 | 1313 | 44 | 43 | 97.7273 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7613 | 96.7656 | 96.7570 | 71.4697 | 1825 | 61 | 1820 | 61 | 57 | 93.4426 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.9933 | 91.3832 | 96.7568 | 85.7571 | 1612 | 152 | 1611 | 54 | 24 | 44.4444 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | het | 95.4667 | 94.2105 | 96.7568 | 95.6957 | 179 | 11 | 179 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0190 | 97.2826 | 96.7568 | 95.0508 | 179 | 5 | 179 | 6 | 1 | 16.6667 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | * | 81.7650 | 70.7957 | 96.7567 | 85.8314 | 7847 | 3237 | 7846 | 263 | 11 | 4.1825 | |
| eyeh-varpipe | INDEL | * | map_siren | het | 96.4251 | 96.0958 | 96.7566 | 78.9179 | 4332 | 176 | 4803 | 161 | 108 | 67.0807 | |
| jpowers-varprowl | SNP | tv | map_l100_m1_e0 | het | 96.9444 | 97.1330 | 96.7565 | 74.5209 | 14975 | 442 | 14975 | 502 | 99 | 19.7211 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | * | 92.0378 | 87.7579 | 96.7564 | 95.8853 | 3147 | 439 | 3162 | 106 | 17 | 16.0377 | |
| dgrover-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3242 | 93.9349 | 96.7552 | 73.1272 | 1270 | 82 | 1312 | 44 | 43 | 97.7273 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.2868 | 81.1828 | 96.7532 | 67.3729 | 151 | 35 | 149 | 5 | 4 | 80.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.3856 | 98.0263 | 96.7532 | 91.1341 | 149 | 3 | 149 | 5 | 2 | 40.0000 | |
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.9712 | 89.4737 | 96.7532 | 47.3804 | 221 | 26 | 447 | 15 | 15 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3498 | 100.0000 | 96.7532 | 93.7525 | 1 | 0 | 149 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | het | 96.2707 | 95.7929 | 96.7532 | 88.9129 | 296 | 13 | 298 | 10 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | het | 96.2709 | 95.7942 | 96.7524 | 90.3659 | 2141 | 94 | 2145 | 72 | 11 | 15.2778 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | homalt | 80.5851 | 69.0476 | 96.7517 | 89.5717 | 319 | 143 | 417 | 14 | 7 | 50.0000 | |
| ciseli-custom | SNP | ti | HG002complexvar | het | 96.3296 | 95.9112 | 96.7516 | 18.3708 | 301896 | 12870 | 299422 | 10053 | 353 | 3.5114 | |