PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32801-32850 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | het | 63.4051 | 47.0954 | 96.9957 | 81.1030 | 227 | 255 | 226 | 7 | 4 | 57.1429 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 92.7348 | 88.8325 | 96.9957 | 40.7125 | 1050 | 132 | 226 | 7 | 7 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l250_m2_e1 | * | 97.2113 | 97.4280 | 96.9956 | 89.9894 | 2841 | 75 | 2841 | 88 | 12 | 13.6364 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m1_e0 | het | 97.3253 | 97.6584 | 96.9945 | 85.1972 | 709 | 17 | 710 | 22 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0670 | 99.1636 | 96.9944 | 39.3861 | 2134 | 18 | 2969 | 92 | 42 | 45.6522 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | * | 96.7147 | 96.4368 | 96.9942 | 87.9173 | 839 | 31 | 839 | 26 | 6 | 23.0769 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7610 | 98.5407 | 96.9935 | 76.3552 | 6145 | 91 | 6291 | 195 | 48 | 24.6154 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.7796 | 85.3147 | 96.9925 | 91.6614 | 122 | 21 | 129 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 83.3542 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | het | 97.5401 | 98.0947 | 96.9918 | 89.4930 | 3192 | 62 | 3192 | 99 | 2 | 2.0202 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.2565 | 97.5239 | 96.9905 | 69.1218 | 17133 | 435 | 16952 | 526 | 189 | 35.9316 | |
| ckim-isaac | INDEL | I6_15 | * | homalt | 87.6777 | 79.9968 | 96.9903 | 41.8473 | 4991 | 1248 | 4995 | 155 | 121 | 78.0645 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8591 | 96.7290 | 96.9897 | 63.1840 | 3105 | 105 | 3093 | 96 | 93 | 96.8750 | |
| ckim-gatk | SNP | tv | map_l100_m0_e0 | * | 81.7454 | 70.6424 | 96.9896 | 85.6470 | 7830 | 3254 | 7829 | 243 | 11 | 4.5268 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | het | 97.6756 | 98.3715 | 96.9895 | 90.4284 | 1933 | 32 | 1933 | 60 | 9 | 15.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3347 | 93.7357 | 96.9893 | 65.2412 | 9442 | 631 | 9310 | 289 | 255 | 88.2353 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2430 | 99.5309 | 96.9881 | 59.7341 | 11032 | 52 | 11045 | 343 | 3 | 0.8746 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.2666 | 89.8204 | 96.9880 | 69.6527 | 150 | 17 | 161 | 5 | 5 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | HG002compoundhet | * | 95.0368 | 93.1632 | 96.9873 | 36.8937 | 8176 | 600 | 8177 | 254 | 252 | 99.2126 | |
| ckim-dragen | SNP | * | map_l100_m2_e0 | het | 98.0933 | 99.2263 | 96.9859 | 73.8971 | 46040 | 359 | 46046 | 1431 | 119 | 8.3159 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.9683 | 98.9717 | 96.9849 | 89.2621 | 770 | 8 | 772 | 24 | 4 | 16.6667 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.6459 | 92.4171 | 96.9849 | 47.4934 | 195 | 16 | 193 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2480 | 97.5124 | 96.9849 | 88.9751 | 196 | 5 | 193 | 6 | 1 | 16.6667 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9251 | 92.9511 | 96.9847 | 70.2893 | 1978 | 150 | 1962 | 61 | 54 | 88.5246 | |
| anovak-vg | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.4699 | 97.9603 | 96.9843 | 55.7493 | 19787 | 412 | 20132 | 626 | 469 | 74.9201 | |
| jmaeng-gatk | SNP | ti | segdup | het | 98.2022 | 99.4514 | 96.9839 | 94.5092 | 11964 | 66 | 11962 | 372 | 2 | 0.5376 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | het | 98.0614 | 99.1655 | 96.9816 | 75.2723 | 15805 | 133 | 15808 | 492 | 32 | 6.5041 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.3955 | 88.2236 | 96.9815 | 64.0909 | 884 | 118 | 996 | 31 | 27 | 87.0968 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.8820 | 73.9003 | 96.9811 | 55.3120 | 252 | 89 | 257 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.8820 | 73.9003 | 96.9811 | 55.3872 | 252 | 89 | 257 | 8 | 7 | 87.5000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | * | 95.6905 | 94.4340 | 96.9809 | 66.6013 | 11554 | 681 | 11564 | 360 | 339 | 94.1667 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.1407 | 99.3309 | 96.9788 | 67.1842 | 35182 | 237 | 35277 | 1099 | 205 | 18.6533 | |
| mlin-fermikit | INDEL | D1_5 | map_siren | het | 85.2572 | 76.0650 | 96.9765 | 74.1833 | 1732 | 545 | 1732 | 54 | 36 | 66.6667 | |
| astatham-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.7269 | 90.6883 | 96.9762 | 47.9190 | 224 | 23 | 449 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.1199 | 93.3333 | 96.9762 | 82.0124 | 448 | 32 | 449 | 14 | 10 | 71.4286 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e0 | * | 83.8941 | 73.9220 | 96.9762 | 86.2792 | 12189 | 4300 | 12187 | 380 | 13 | 3.4211 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | * | 84.0047 | 74.0950 | 96.9745 | 86.2788 | 12342 | 4315 | 12340 | 385 | 14 | 3.6364 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | * | 95.8880 | 94.8263 | 96.9738 | 65.9095 | 11602 | 633 | 11600 | 362 | 359 | 99.1713 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | het | 80.6416 | 69.0185 | 96.9723 | 90.3096 | 5703 | 2560 | 5701 | 178 | 22 | 12.3596 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.8332 | 90.8911 | 96.9721 | 73.4710 | 3672 | 368 | 3651 | 114 | 38 | 33.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | het | 97.1764 | 97.3825 | 96.9713 | 77.3988 | 1637 | 44 | 1889 | 59 | 41 | 69.4915 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6651 | 96.3610 | 96.9712 | 69.6092 | 3919 | 148 | 3906 | 122 | 111 | 90.9836 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1100 | 99.2769 | 96.9703 | 51.0036 | 5080 | 37 | 5089 | 159 | 149 | 93.7107 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.4824 | 96.0000 | 96.9697 | 58.2278 | 24 | 1 | 32 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | homalt | 95.5224 | 94.1176 | 96.9697 | 95.0376 | 32 | 2 | 32 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m0_e0 | hetalt | 95.4305 | 93.9394 | 96.9697 | 90.0901 | 31 | 2 | 32 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.0326 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.4615 | 100.0000 | 96.9697 | 88.5017 | 66 | 0 | 64 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.2896 | 89.8785 | 96.9697 | 47.4403 | 222 | 25 | 448 | 14 | 14 | 100.0000 | |