PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32501-32550 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6793 | 98.2539 | 97.1113 | 81.2381 | 44904 | 798 | 44812 | 1333 | 148 | 11.1028 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | * | 97.5647 | 98.0226 | 97.1111 | 71.6649 | 24538 | 495 | 24539 | 730 | 232 | 31.7808 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.4485 | 99.8241 | 97.1103 | 48.4061 | 5108 | 9 | 5108 | 152 | 151 | 99.3421 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6409 | 98.1777 | 97.1099 | 61.1163 | 9913 | 184 | 10114 | 301 | 207 | 68.7708 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0748 | 89.3617 | 97.1098 | 66.2109 | 168 | 20 | 168 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | * | 96.5632 | 96.0227 | 97.1098 | 92.4056 | 169 | 7 | 168 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 97.6744 | 98.2456 | 97.1098 | 95.8000 | 168 | 3 | 168 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 61.3581 | 44.8472 | 97.1096 | 76.3054 | 4169 | 5127 | 5006 | 149 | 142 | 95.3020 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4167 | 97.7259 | 97.1096 | 71.4786 | 6274 | 146 | 6249 | 186 | 32 | 17.2043 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4167 | 97.7259 | 97.1096 | 71.4786 | 6274 | 146 | 6249 | 186 | 32 | 17.2043 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.1666 | 95.2420 | 97.1093 | 71.1366 | 2342 | 117 | 2318 | 69 | 36 | 52.1739 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e0 | * | 96.9548 | 96.8008 | 97.1093 | 73.8651 | 29290 | 968 | 29294 | 872 | 409 | 46.9037 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7673 | 98.4344 | 97.1092 | 52.3550 | 11254 | 179 | 11287 | 336 | 18 | 5.3571 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002compoundhet | * | 95.1177 | 93.2080 | 97.1073 | 33.8339 | 2182 | 159 | 2182 | 65 | 63 | 96.9231 | |
| ckim-gatk | SNP | tv | map_l125_m1_e0 | * | 83.4275 | 73.1269 | 97.1059 | 85.2195 | 11712 | 4304 | 11710 | 349 | 14 | 4.0115 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7493 | 83.4297 | 97.1047 | 92.9146 | 433 | 86 | 436 | 13 | 1 | 7.6923 | |
| jli-custom | INDEL | * | HG002compoundhet | * | 95.6209 | 94.1822 | 97.1042 | 61.3856 | 28217 | 1743 | 28100 | 838 | 804 | 95.9427 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | het | 98.3041 | 99.5361 | 97.1022 | 91.0806 | 1931 | 9 | 1910 | 57 | 4 | 7.0175 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3560 | 99.6428 | 97.1020 | 45.5337 | 10320 | 37 | 10320 | 308 | 303 | 98.3766 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.5676 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | het | 98.0464 | 99.0099 | 97.1014 | 89.8080 | 200 | 2 | 201 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 86.8821 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.5676 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8889 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.7660 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.5572 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8530 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.2298 | 72.8261 | 97.1014 | 59.1716 | 67 | 25 | 67 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.4009 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.6603 | 88.6076 | 97.1014 | 74.9319 | 280 | 36 | 268 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.0008 | 80.4598 | 97.1014 | 83.0882 | 70 | 17 | 67 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8350 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0528 | 78.8889 | 97.1014 | 85.5649 | 71 | 19 | 67 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.2188 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.4732 | 91.9834 | 97.1014 | 61.6929 | 4888 | 426 | 4891 | 146 | 111 | 76.0274 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | het | 95.0101 | 93.0070 | 97.1014 | 84.4419 | 133 | 10 | 134 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.7243 | 96.3506 | 97.1009 | 69.6907 | 2561 | 97 | 2579 | 77 | 32 | 41.5584 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3434 | 99.6186 | 97.1004 | 38.0755 | 1306 | 5 | 1306 | 39 | 35 | 89.7436 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 84.8955 | 75.4173 | 97.0986 | 64.6133 | 497 | 162 | 502 | 15 | 11 | 73.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 84.8955 | 75.4173 | 97.0986 | 64.6133 | 497 | 162 | 502 | 15 | 11 | 73.3333 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.2901 | 99.5113 | 97.0984 | 68.6486 | 3258 | 16 | 3246 | 97 | 94 | 96.9072 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 96.6463 | 96.1992 | 97.0976 | 90.1019 | 734 | 29 | 736 | 22 | 4 | 18.1818 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.0029 | 89.2396 | 97.0976 | 37.9705 | 622 | 75 | 736 | 22 | 18 | 81.8182 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.9405 | 94.8116 | 97.0966 | 77.0267 | 1736 | 95 | 1739 | 52 | 3 | 5.7692 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 39.8487 | 25.0685 | 97.0961 | 38.8155 | 549 | 1641 | 1304 | 39 | 39 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.2627 | 95.4437 | 97.0959 | 63.8638 | 13951 | 666 | 13574 | 406 | 386 | 95.0739 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 87.8990 | 80.2937 | 97.0958 | 47.6367 | 1039 | 255 | 1237 | 37 | 31 | 83.7838 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | het | 97.5662 | 98.0411 | 97.0958 | 88.5957 | 1001 | 20 | 1003 | 30 | 4 | 13.3333 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.1956 | 99.3209 | 97.0954 | 73.3937 | 1170 | 8 | 1170 | 35 | 35 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3855 | 99.7116 | 97.0943 | 71.3328 | 1383 | 4 | 1370 | 41 | 1 | 2.4390 | |