PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32301-32350 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | segdup | het | 97.9069 | 98.6357 | 97.1888 | 94.2947 | 1446 | 20 | 1452 | 42 | 30 | 71.4286 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 79.5482 | 67.3279 | 97.1883 | 91.0248 | 577 | 280 | 795 | 23 | 11 | 47.8261 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | * | 96.1134 | 95.0631 | 97.1871 | 62.4825 | 11746 | 610 | 11747 | 340 | 264 | 77.6471 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | * | 97.9668 | 98.7606 | 97.1856 | 77.0392 | 46617 | 585 | 46617 | 1350 | 276 | 20.4444 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.3386 | 99.5196 | 97.1853 | 74.6230 | 1243 | 6 | 1243 | 36 | 27 | 75.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.3386 | 99.5196 | 97.1853 | 74.6230 | 1243 | 6 | 1243 | 36 | 27 | 75.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2439 | 97.3027 | 97.1852 | 57.6417 | 35605 | 987 | 38256 | 1108 | 730 | 65.8845 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.3228 | 86.1277 | 97.1847 | 65.3666 | 863 | 139 | 863 | 25 | 22 | 88.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 91.7858 | 86.9565 | 97.1831 | 21.9780 | 140 | 21 | 138 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0856 | 78.8889 | 97.1831 | 84.3612 | 71 | 19 | 69 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | * | 97.6817 | 98.1855 | 97.1831 | 88.7182 | 487 | 9 | 621 | 18 | 10 | 55.5556 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1831 | 97.1831 | 97.1831 | 91.2562 | 69 | 2 | 69 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.4795 | 97.7778 | 97.1831 | 95.5514 | 44 | 1 | 69 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | het | 93.2432 | 89.6104 | 97.1831 | 51.0345 | 69 | 8 | 69 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | homalt | 97.3588 | 97.5352 | 97.1831 | 87.5874 | 277 | 7 | 276 | 8 | 5 | 62.5000 | |
| ckim-gatk | SNP | * | map_l250_m2_e1 | * | 70.8260 | 55.7155 | 97.1828 | 96.2381 | 4450 | 3537 | 4450 | 129 | 10 | 7.7519 | |
| asubramanian-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.2899 | 99.4234 | 97.1820 | 55.6903 | 1207 | 7 | 1207 | 35 | 34 | 97.1429 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 97.8688 | 98.5663 | 97.1811 | 88.3046 | 1375 | 20 | 1379 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | SNP | ti | map_l250_m0_e0 | * | 64.0900 | 47.8102 | 97.1810 | 98.0371 | 655 | 715 | 655 | 19 | 2 | 10.5263 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 87.1648 | 79.0219 | 97.1787 | 89.3631 | 614 | 163 | 620 | 18 | 2 | 11.1111 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | het | 95.9671 | 94.7853 | 97.1787 | 91.9444 | 309 | 17 | 310 | 9 | 0 | 0.0000 | |
| ckim-gatk | SNP | * | map_l250_m2_e0 | * | 70.6281 | 55.4724 | 97.1784 | 96.2246 | 4374 | 3511 | 4374 | 127 | 10 | 7.8740 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 88.2450 | 80.8166 | 97.1772 | 89.7454 | 8729 | 2072 | 8744 | 254 | 45 | 17.7165 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2879 | 97.3995 | 97.1766 | 75.1789 | 4869 | 130 | 4853 | 141 | 104 | 73.7589 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2879 | 97.3995 | 97.1766 | 75.1789 | 4869 | 130 | 4853 | 141 | 104 | 73.7589 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2368 | 99.3209 | 97.1761 | 73.3746 | 1170 | 8 | 1170 | 34 | 34 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 82.9231 | 72.3164 | 97.1761 | 79.6553 | 384 | 147 | 585 | 17 | 3 | 17.6471 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.8453 | 92.6241 | 97.1756 | 71.4036 | 1306 | 104 | 1273 | 37 | 32 | 86.4865 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0823 | 99.0065 | 97.1751 | 54.0902 | 6677 | 67 | 6708 | 195 | 42 | 21.5385 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5673 | 100.0000 | 97.1751 | 81.6199 | 172 | 0 | 172 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | * | HG002complexvar | hetalt | 86.5340 | 77.9941 | 97.1740 | 71.6888 | 2885 | 814 | 2854 | 83 | 75 | 90.3614 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.5411 | 97.9111 | 97.1738 | 70.8692 | 2953 | 63 | 2957 | 86 | 7 | 8.1395 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.5878 | 96.0095 | 97.1732 | 53.9900 | 14195 | 590 | 14197 | 413 | 388 | 93.9467 | |
| gduggal-snapplat | SNP | ti | * | hetalt | 95.9951 | 94.8454 | 97.1731 | 52.0745 | 552 | 30 | 550 | 16 | 15 | 93.7500 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.6847 | 76.6260 | 97.1722 | 71.5227 | 377 | 115 | 378 | 11 | 10 | 90.9091 | |
| egarrison-hhga | INDEL | D1_5 | * | * | 96.9873 | 96.8033 | 97.1720 | 57.4559 | 142054 | 4691 | 142118 | 4136 | 3666 | 88.6364 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | * | 95.3148 | 93.5278 | 97.1715 | 34.8185 | 8208 | 568 | 9894 | 288 | 283 | 98.2639 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2617 | 95.3704 | 97.1698 | 89.5257 | 103 | 5 | 103 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | * | 95.7091 | 94.2918 | 97.1698 | 74.6083 | 45195 | 2736 | 45216 | 1317 | 683 | 51.8603 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4001 | 93.6937 | 97.1698 | 60.5948 | 208 | 14 | 206 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1698 | 97.1698 | 97.1698 | 95.7819 | 103 | 3 | 103 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | * | 97.4527 | 97.7372 | 97.1698 | 91.9458 | 1339 | 31 | 1339 | 39 | 1 | 2.5641 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | * | 97.9545 | 98.7522 | 97.1696 | 76.9826 | 46140 | 583 | 46140 | 1344 | 275 | 20.4613 | |
| jmaeng-gatk | INDEL | D1_5 | map_siren | * | 98.0661 | 98.9799 | 97.1690 | 84.7576 | 3493 | 36 | 3501 | 102 | 10 | 9.8039 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | * | 97.9382 | 98.7204 | 97.1684 | 75.3206 | 44747 | 580 | 44747 | 1304 | 273 | 20.9356 | |
| ckim-dragen | SNP | * | map_l150_m0_e0 | * | 97.7617 | 98.3627 | 97.1680 | 81.2391 | 11835 | 197 | 11837 | 345 | 42 | 12.1739 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | homalt | 95.6116 | 94.1061 | 97.1660 | 88.8033 | 479 | 30 | 480 | 14 | 7 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.2828 | 75.9897 | 97.1657 | 76.5450 | 7064 | 2232 | 7062 | 206 | 204 | 99.0291 | |
| astatham-gatk | INDEL | * | map_l100_m0_e0 | * | 96.7251 | 96.2892 | 97.1649 | 87.6728 | 1505 | 58 | 1508 | 44 | 9 | 20.4545 | |