PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32201-32250 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_siren | hetalt | 95.4545 | 93.7500 | 97.2222 | 89.4325 | 105 | 7 | 105 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 86.4151 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.8696 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | homalt | 67.9612 | 52.2388 | 97.2222 | 85.3659 | 35 | 32 | 35 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_siren | homalt | 55.5556 | 38.8889 | 97.2222 | 80.4348 | 35 | 55 | 35 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 94.3627 | 91.6667 | 97.2222 | 98.4307 | 11 | 1 | 35 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 94.4012 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | homalt | 97.2222 | 97.2222 | 97.2222 | 87.8378 | 35 | 1 | 35 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6218 | 92.1569 | 97.2222 | 94.1368 | 47 | 4 | 35 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2222 | 97.2222 | 97.2222 | 88.4244 | 35 | 1 | 35 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 93.7282 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5335 | 93.9024 | 97.2222 | 86.5672 | 154 | 10 | 105 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 86.4662 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.0000 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | * | 95.8904 | 94.5946 | 97.2222 | 95.7558 | 315 | 18 | 315 | 9 | 3 | 33.3333 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.3576 | 79.3103 | 97.2222 | 72.2008 | 69 | 18 | 70 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.6473 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e0 | * | 95.0226 | 92.9204 | 97.2222 | 96.0855 | 105 | 8 | 105 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | * | 96.6469 | 96.0784 | 97.2222 | 93.6095 | 735 | 30 | 735 | 21 | 6 | 28.5714 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 79.5455 | 67.3077 | 97.2222 | 68.9655 | 35 | 17 | 35 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.5232 | 97.8261 | 97.2222 | 95.6311 | 45 | 1 | 70 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | * | 88.6076 | 81.3953 | 97.2222 | 32.0755 | 35 | 8 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.2739 | 87.8049 | 97.2222 | 88.5350 | 36 | 5 | 35 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | homalt | 95.8904 | 94.5946 | 97.2222 | 84.3137 | 140 | 8 | 140 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.1872 | 89.4737 | 97.2222 | 86.9407 | 119 | 14 | 105 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | homalt | 85.0304 | 75.5556 | 97.2222 | 97.5121 | 34 | 11 | 35 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.1548 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | * | 96.5517 | 95.8904 | 97.2222 | 93.0165 | 70 | 3 | 70 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l250_m1_e0 | het | 69.6080 | 54.2105 | 97.2222 | 97.4636 | 103 | 87 | 105 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 86.4151 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.8696 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6218 | 92.1569 | 97.2222 | 94.1368 | 47 | 4 | 35 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | het | 94.9267 | 92.7390 | 97.2201 | 89.8845 | 1290 | 101 | 1294 | 37 | 5 | 13.5135 | |
| gduggal-snapfb | INDEL | D1_5 | segdup | * | 97.3404 | 97.4615 | 97.2197 | 94.7311 | 1075 | 28 | 1084 | 31 | 5 | 16.1290 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.6704 | 98.1255 | 97.2195 | 71.9856 | 32613 | 623 | 41783 | 1195 | 869 | 72.7197 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.5967 | 90.2348 | 97.2188 | 50.5577 | 3151 | 341 | 3146 | 90 | 73 | 81.1111 | |
| gduggal-bwaplat | INDEL | D1_5 | * | hetalt | 83.8440 | 73.7042 | 97.2186 | 75.9425 | 7551 | 2694 | 7550 | 216 | 214 | 99.0741 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m1_e0 | * | 97.2822 | 97.3501 | 97.2145 | 88.4436 | 698 | 19 | 698 | 20 | 2 | 10.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 97.9664 | 98.7304 | 97.2141 | 87.0980 | 1322 | 17 | 1326 | 38 | 5 | 13.1579 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6451 | 94.1259 | 97.2141 | 69.2007 | 2003 | 125 | 1989 | 57 | 51 | 89.4737 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.2401 | 97.2678 | 97.2125 | 76.6096 | 534 | 15 | 558 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.3110 | 89.7106 | 97.2125 | 69.4681 | 279 | 32 | 279 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8288 | 98.4539 | 97.2116 | 67.2453 | 14391 | 226 | 14015 | 402 | 380 | 94.5274 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | * | 95.7724 | 94.3751 | 97.2116 | 76.1299 | 46207 | 2754 | 46228 | 1326 | 687 | 51.8100 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8288 | 96.4491 | 97.2114 | 54.8569 | 14260 | 525 | 14258 | 409 | 404 | 98.7775 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.2757 | 97.3404 | 97.2112 | 60.3476 | 732 | 20 | 732 | 21 | 21 | 100.0000 | |
| ckim-dragen | SNP | * | segdup | * | 98.4991 | 99.8219 | 97.2109 | 92.1838 | 28017 | 50 | 28022 | 804 | 14 | 1.7413 | |
| mlin-fermikit | SNP | tv | map_l250_m1_e0 | het | 40.2130 | 25.3497 | 97.2103 | 81.1869 | 453 | 1334 | 453 | 13 | 0 | 0.0000 | |