PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31751-31800 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2878 | 89.5161 | 97.3913 | 86.9615 | 111 | 13 | 112 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 95.3176 | 112 | 3 | 112 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002compoundhet | * | 95.9469 | 94.5452 | 97.3908 | 62.1995 | 11682 | 674 | 11683 | 313 | 258 | 82.4281 | |
| qzeng-custom | SNP | tv | segdup | het | 97.9263 | 98.4679 | 97.3907 | 94.6360 | 5206 | 81 | 5188 | 139 | 6 | 4.3166 | |
| ckim-gatk | INDEL | I1_5 | HG002compoundhet | * | 94.8213 | 92.3843 | 97.3904 | 66.1548 | 11415 | 941 | 11420 | 306 | 304 | 99.3464 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | * | 97.5855 | 97.7823 | 97.3896 | 88.3263 | 485 | 11 | 485 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.5830 | 99.8064 | 97.3892 | 55.2704 | 5670 | 11 | 5670 | 152 | 151 | 99.3421 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.0864 | 98.7941 | 97.3887 | 79.6107 | 6800 | 83 | 6825 | 183 | 3 | 1.6393 | |
| raldana-dualsentieon | SNP | * | map_l250_m2_e0 | het | 97.5099 | 97.6319 | 97.3881 | 89.3936 | 5071 | 123 | 5071 | 136 | 3 | 2.2059 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.9502 | 96.5174 | 97.3869 | 63.5264 | 970 | 35 | 969 | 26 | 17 | 65.3846 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.0694 | 89.1185 | 97.3869 | 71.5714 | 1941 | 237 | 1938 | 52 | 24 | 46.1538 | |
| qzeng-custom | INDEL | I1_5 | segdup | het | 97.4851 | 97.5836 | 97.3868 | 95.7292 | 525 | 13 | 559 | 15 | 2 | 13.3333 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 90.1766 | 83.9608 | 97.3863 | 87.9176 | 1628 | 311 | 1863 | 50 | 36 | 72.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m2_e1 | het | 97.5147 | 97.6444 | 97.3854 | 89.4825 | 5140 | 124 | 5140 | 138 | 3 | 2.1739 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 48.6822 | 32.4528 | 97.3822 | 61.4141 | 172 | 358 | 186 | 5 | 5 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.7350 | 92.2280 | 97.3822 | 89.6054 | 356 | 30 | 372 | 10 | 1 | 10.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.8618 | 90.5873 | 97.3819 | 58.7738 | 3609 | 375 | 3608 | 97 | 92 | 94.8454 | |
| ckim-gatk | SNP | ti | map_l125_m2_e0 | het | 89.0209 | 81.9824 | 97.3815 | 86.6933 | 15475 | 3401 | 15471 | 416 | 41 | 9.8558 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | het | 68.8482 | 53.2468 | 97.3810 | 81.0640 | 410 | 360 | 409 | 11 | 4 | 36.3636 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.5380 | 73.1417 | 97.3796 | 64.9640 | 10814 | 3971 | 10814 | 291 | 228 | 78.3505 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.4362 | 95.5112 | 97.3793 | 65.7857 | 383 | 18 | 706 | 19 | 18 | 94.7368 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.6047 | 90.1119 | 97.3790 | 63.5026 | 483 | 53 | 483 | 13 | 11 | 84.6154 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | * | 96.8419 | 96.3115 | 97.3781 | 91.7140 | 2115 | 81 | 2117 | 57 | 8 | 14.0351 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | het | 98.0666 | 98.7652 | 97.3778 | 90.6744 | 5199 | 65 | 5199 | 140 | 25 | 17.8571 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.0631 | 58.4648 | 97.3776 | 92.1719 | 556 | 395 | 557 | 15 | 13 | 86.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 82.9662 | 72.2705 | 97.3775 | 48.0824 | 10141 | 3891 | 10137 | 273 | 266 | 97.4359 | |
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | * | 96.9865 | 96.5986 | 97.3774 | 87.3376 | 852 | 30 | 854 | 23 | 3 | 13.0435 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5785 | 95.7929 | 97.3770 | 64.6991 | 296 | 13 | 297 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 87.6436 | 79.6791 | 97.3770 | 64.0330 | 298 | 76 | 297 | 8 | 7 | 87.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0930 | 96.8116 | 97.3761 | 87.2063 | 334 | 11 | 334 | 9 | 2 | 22.2222 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.9385 | 90.7361 | 97.3752 | 52.7808 | 18022 | 1840 | 18957 | 511 | 394 | 77.1037 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.9189 | 96.4670 | 97.3750 | 70.9358 | 3495 | 128 | 3487 | 94 | 86 | 91.4894 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002compoundhet | het | 96.0823 | 94.8235 | 97.3750 | 74.4000 | 806 | 44 | 779 | 21 | 5 | 23.8095 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | het | 88.7011 | 81.4464 | 97.3746 | 85.8996 | 14877 | 3389 | 14873 | 401 | 40 | 9.9751 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | * | 96.9835 | 96.5962 | 97.3739 | 84.0045 | 1873 | 66 | 2336 | 63 | 38 | 60.3175 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.6782 | 97.9861 | 97.3722 | 73.2523 | 1411 | 29 | 1371 | 37 | 5 | 13.5135 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | * | 94.6029 | 91.9877 | 97.3711 | 66.5483 | 11366 | 990 | 11371 | 307 | 304 | 99.0228 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | * | 93.7832 | 90.4507 | 97.3706 | 62.1815 | 1184 | 125 | 1185 | 32 | 29 | 90.6250 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | * | 96.1407 | 94.9417 | 97.3704 | 66.4075 | 11731 | 625 | 11738 | 317 | 315 | 99.3691 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1900 | 99.0255 | 97.3686 | 74.3160 | 14429 | 142 | 14616 | 395 | 10 | 2.5317 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1900 | 99.0255 | 97.3686 | 74.3160 | 14429 | 142 | 14616 | 395 | 10 | 2.5317 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 80.0000 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.7133 | 90.3226 | 97.3684 | 99.9248 | 112 | 12 | 111 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.4483 | 86.2069 | 97.3684 | 99.9056 | 75 | 12 | 74 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.3684 | 95.2912 | 0 | 0 | 37 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9615 | 94.5946 | 97.3684 | 70.7692 | 35 | 2 | 37 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 72.3623 | 57.5758 | 97.3684 | 68.0672 | 38 | 28 | 37 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.6667 | 100.0000 | 97.3684 | 84.9604 | 114 | 0 | 111 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6667 | 100.0000 | 97.3684 | 62.2901 | 481 | 0 | 481 | 13 | 8 | 61.5385 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3328 | 97.2973 | 97.3684 | 61.6162 | 36 | 1 | 37 | 1 | 1 | 100.0000 | |