PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31401-31450 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 80.6080 | 68.7048 | 97.5000 | 81.0516 | 3517 | 1602 | 3510 | 90 | 34 | 37.7778 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | hetalt | 98.7342 | 100.0000 | 97.5000 | 78.2609 | 9 | 0 | 39 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | hetalt | 73.5849 | 59.0909 | 97.5000 | 93.2660 | 78 | 54 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | het | 97.0954 | 96.6942 | 97.5000 | 95.0556 | 117 | 4 | 117 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | het | 94.7694 | 92.1875 | 97.5000 | 85.8156 | 59 | 5 | 78 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | tech_badpromoters | het | 92.8571 | 88.6364 | 97.5000 | 65.2174 | 39 | 5 | 39 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_siren | hetalt | 68.4843 | 52.7778 | 97.5000 | 75.4601 | 38 | 34 | 39 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.8838 | 90.5263 | 97.5000 | 91.3886 | 86 | 9 | 78 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.5055 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4132 | 89.6552 | 97.5000 | 85.2399 | 78 | 9 | 78 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.2963 | 95.1220 | 97.5000 | 93.0314 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.2775 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | func_cds | * | 93.9759 | 90.6977 | 97.5000 | 42.8571 | 39 | 4 | 39 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.0808 | 82.0000 | 97.5000 | 46.5649 | 41 | 9 | 273 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.3583 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4132 | 89.6552 | 97.5000 | 85.0187 | 78 | 9 | 78 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6738 | 99.8792 | 97.4971 | 38.9618 | 7443 | 9 | 7440 | 191 | 3 | 1.5707 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.9148 | 78.4053 | 97.4964 | 52.0513 | 4012 | 1105 | 4011 | 103 | 89 | 86.4078 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0429 | 88.9798 | 97.4948 | 82.9386 | 4239 | 525 | 4242 | 109 | 14 | 12.8440 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 82.2286 | 71.0963 | 97.4943 | 44.8492 | 428 | 174 | 428 | 11 | 10 | 90.9091 | |
| ckim-gatk | SNP | ti | map_l250_m1_e0 | * | 69.7981 | 54.3568 | 97.4931 | 96.0316 | 2489 | 2090 | 2489 | 64 | 8 | 12.5000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.2565 | 95.0509 | 97.4930 | 80.7300 | 653 | 34 | 700 | 18 | 13 | 72.2222 | |
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | * | 58.5236 | 41.8112 | 97.4919 | 97.2532 | 1205 | 1677 | 1205 | 31 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.4635 | 95.4566 | 97.4919 | 64.1585 | 4244 | 202 | 4198 | 108 | 104 | 96.2963 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | het | 96.9025 | 96.3203 | 97.4918 | 88.7346 | 890 | 34 | 894 | 23 | 2 | 8.6957 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 97.9819 | 98.4772 | 97.4916 | 87.0169 | 582 | 9 | 583 | 15 | 2 | 13.3333 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8650 | 94.2920 | 97.4914 | 60.1243 | 2577 | 156 | 2565 | 66 | 61 | 92.4242 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | * | 98.2188 | 98.9571 | 97.4914 | 85.7120 | 854 | 9 | 855 | 22 | 4 | 18.1818 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | het | 96.8725 | 96.2617 | 97.4910 | 56.0860 | 824 | 32 | 816 | 21 | 15 | 71.4286 | |
| cchapple-custom | SNP | ti | map_siren | het | 98.0329 | 98.5813 | 97.4906 | 61.4640 | 61497 | 885 | 61538 | 1584 | 362 | 22.8535 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4945 | 99.5196 | 97.4902 | 74.7924 | 1243 | 6 | 1243 | 32 | 23 | 71.8750 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4945 | 99.5196 | 97.4902 | 74.7924 | 1243 | 6 | 1243 | 32 | 23 | 71.8750 | |
| jpowers-varprowl | SNP | ti | map_l125_m1_e0 | het | 96.9048 | 96.3265 | 97.4900 | 77.0233 | 17595 | 671 | 17595 | 453 | 150 | 33.1126 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4662 | 80.9714 | 97.4899 | 81.7669 | 20472 | 4811 | 20468 | 527 | 16 | 3.0361 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.4234 | 99.3750 | 97.4898 | 76.6883 | 1431 | 9 | 1437 | 37 | 7 | 18.9189 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.7845 | 66.1017 | 97.4895 | 78.8121 | 234 | 120 | 233 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.1935 | 96.8999 | 97.4889 | 57.0530 | 36727 | 1175 | 36532 | 941 | 927 | 98.5122 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | het | 62.2449 | 45.7173 | 97.4886 | 98.4812 | 427 | 507 | 427 | 11 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | het | 98.0634 | 98.6450 | 97.4886 | 68.5684 | 1092 | 15 | 854 | 22 | 12 | 54.5455 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | * | 96.3775 | 95.2915 | 97.4886 | 88.7239 | 1275 | 63 | 1281 | 33 | 7 | 21.2121 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.2350 | 95.0135 | 97.4884 | 66.2374 | 705 | 37 | 1048 | 27 | 19 | 70.3704 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | * | 94.2741 | 91.2655 | 97.4879 | 59.7696 | 5820 | 557 | 5821 | 150 | 140 | 93.3333 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | het | 96.9503 | 96.4187 | 97.4878 | 78.3661 | 18200 | 676 | 18200 | 469 | 150 | 31.9829 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8830 | 96.2858 | 97.4877 | 51.4550 | 13273 | 512 | 13271 | 342 | 335 | 97.9532 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.8025 | 94.1748 | 97.4874 | 88.3010 | 194 | 12 | 194 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.9836 | 98.4848 | 97.4874 | 91.7152 | 195 | 3 | 194 | 5 | 3 | 60.0000 | |