PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31301-31350 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7080 | 99.9112 | 97.5335 | 63.5201 | 2250 | 2 | 2254 | 57 | 32 | 56.1404 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | het | 41.8044 | 26.6036 | 97.5328 | 80.1621 | 1265 | 3490 | 1265 | 32 | 1 | 3.1250 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 80.6497 | 68.7500 | 97.5309 | 82.4295 | 143 | 65 | 237 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.0000 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3287 | 89.4737 | 97.5309 | 91.1087 | 85 | 10 | 79 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | * | 70.5357 | 55.2448 | 97.5309 | 95.0185 | 79 | 64 | 79 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | * | 96.9325 | 96.3415 | 97.5309 | 93.1646 | 79 | 3 | 79 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 50.3067 | 79 | 1 | 79 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-vqsr | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.7568 | 97.9839 | 97.5309 | 89.9783 | 243 | 5 | 316 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5329 | 95.5556 | 97.5304 | 68.9206 | 2537 | 118 | 2488 | 63 | 54 | 85.7143 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1535 | 96.7800 | 97.5299 | 57.5288 | 17102 | 569 | 17097 | 433 | 414 | 95.6120 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1535 | 96.7800 | 97.5299 | 57.5288 | 17102 | 569 | 17097 | 433 | 414 | 95.6120 | |
| asubramanian-gatk | INDEL | D6_15 | * | homalt | 98.3624 | 99.2096 | 97.5295 | 55.4016 | 6276 | 50 | 6277 | 159 | 146 | 91.8239 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.6952 | 95.8752 | 97.5293 | 67.9232 | 17084 | 735 | 16698 | 423 | 393 | 92.9078 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | het | 88.5810 | 81.1371 | 97.5288 | 82.6321 | 12801 | 2976 | 12787 | 324 | 244 | 75.3086 | |
| ckim-isaac | INDEL | * | map_siren | het | 87.7323 | 79.7249 | 97.5278 | 80.3155 | 3594 | 914 | 3590 | 91 | 35 | 38.4615 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3696 | 99.2268 | 97.5271 | 78.9884 | 28490 | 222 | 28632 | 726 | 57 | 7.8512 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.3696 | 99.2268 | 97.5271 | 78.9884 | 28490 | 222 | 28632 | 726 | 57 | 7.8512 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.6398 | 90.0513 | 97.5262 | 40.9551 | 878 | 97 | 1025 | 26 | 22 | 84.6154 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.6779 | 97.8306 | 97.5258 | 65.0198 | 947 | 21 | 946 | 24 | 10 | 41.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.0136 | 98.5075 | 97.5248 | 92.5185 | 198 | 3 | 197 | 5 | 3 | 60.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | het | 95.1515 | 92.8910 | 97.5248 | 95.5943 | 196 | 15 | 197 | 5 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2766 | 97.0297 | 97.5248 | 90.6741 | 196 | 6 | 197 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | * | 96.5582 | 95.6110 | 97.5244 | 66.3015 | 11698 | 537 | 11700 | 297 | 294 | 98.9899 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2376 | 96.9527 | 97.5243 | 55.9478 | 36747 | 1155 | 36556 | 928 | 901 | 97.0905 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.0405 | 98.5626 | 97.5238 | 64.3342 | 480 | 7 | 512 | 13 | 4 | 30.7692 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6069 | 99.7147 | 97.5235 | 50.6371 | 2796 | 8 | 2796 | 71 | 71 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | * | 96.4212 | 95.3440 | 97.5230 | 89.5147 | 1372 | 67 | 1378 | 35 | 8 | 22.8571 | |
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | het | 96.6423 | 95.7777 | 97.5227 | 51.7717 | 17421 | 768 | 17282 | 439 | 429 | 97.7221 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | het | 96.9038 | 96.2928 | 97.5225 | 28.0304 | 145146 | 5588 | 145527 | 3697 | 526 | 14.2278 | |
| gduggal-bwafb | SNP | * | segdup | het | 98.4151 | 99.3244 | 97.5223 | 92.8812 | 17200 | 117 | 17200 | 437 | 12 | 2.7460 | |
| eyeh-varpipe | INDEL | D1_5 | HG002complexvar | * | 96.8177 | 96.1241 | 97.5214 | 52.6173 | 31447 | 1268 | 30808 | 783 | 734 | 93.7420 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1193 | 96.7213 | 97.5207 | 95.1210 | 118 | 4 | 118 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3265 | 95.1613 | 97.5207 | 90.8055 | 118 | 6 | 118 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | * | segdup | homalt | 93.7217 | 90.2083 | 97.5197 | 91.8211 | 866 | 94 | 865 | 22 | 17 | 77.2727 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | het | 97.7665 | 98.0153 | 97.5190 | 91.3080 | 1926 | 39 | 1926 | 49 | 9 | 18.3673 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6674 | 99.8437 | 97.5186 | 50.9181 | 5109 | 8 | 5109 | 130 | 129 | 99.2308 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | * | 93.6968 | 90.1639 | 97.5177 | 81.7829 | 275 | 30 | 275 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.8522 | 34.3937 | 97.5171 | 49.4033 | 2811 | 5362 | 3142 | 80 | 77 | 96.2500 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | * | 97.1890 | 96.8633 | 97.5169 | 84.0762 | 1297 | 42 | 1296 | 33 | 8 | 24.2424 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | het | 97.9431 | 98.3732 | 97.5168 | 78.3908 | 6833 | 113 | 6833 | 174 | 33 | 18.9655 | |