PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31051-31100 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.2507 | 80.5274 | 97.6127 | 83.3538 | 4367 | 1056 | 4375 | 107 | 45 | 42.0561 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.2507 | 80.5274 | 97.6127 | 83.3538 | 4367 | 1056 | 4375 | 107 | 45 | 42.0561 | |
| hfeng-pmm2 | INDEL | * | map_l100_m1_e0 | het | 98.0433 | 98.4787 | 97.6117 | 85.3524 | 2201 | 34 | 2207 | 54 | 7 | 12.9630 | |
| ckim-gatk | SNP | ti | map_l250_m2_e1 | * | 71.4464 | 56.3436 | 97.6109 | 96.1177 | 2860 | 2216 | 2860 | 70 | 9 | 12.8571 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | het | 97.5785 | 97.5460 | 97.6109 | 82.4235 | 318 | 8 | 572 | 14 | 8 | 57.1429 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | het | 42.3276 | 27.0229 | 97.6103 | 84.4394 | 531 | 1434 | 531 | 13 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7701 | 99.9578 | 97.6102 | 56.2071 | 2369 | 1 | 2369 | 58 | 57 | 98.2759 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7701 | 99.9578 | 97.6102 | 56.2071 | 2369 | 1 | 2369 | 58 | 57 | 98.2759 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.0535 | 96.5032 | 97.6101 | 85.2011 | 4940 | 179 | 4942 | 121 | 84 | 69.4215 | |
| ciseli-custom | SNP | ti | segdup | homalt | 98.5690 | 99.5470 | 97.6100 | 88.0096 | 7471 | 34 | 7433 | 182 | 99 | 54.3956 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8001 | 97.9911 | 97.6098 | 69.6269 | 1756 | 36 | 1756 | 43 | 31 | 72.0930 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.7010 | 93.8654 | 97.6098 | 62.3325 | 1729 | 113 | 1756 | 43 | 13 | 30.2326 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5915 | 99.5935 | 97.6096 | 62.3406 | 490 | 2 | 490 | 12 | 11 | 91.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 97.0226 | 96.4427 | 97.6096 | 87.2589 | 488 | 18 | 490 | 12 | 1 | 8.3333 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1021 | 88.9925 | 97.6096 | 61.2654 | 477 | 59 | 490 | 12 | 11 | 91.6667 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.4123 | 91.4179 | 97.6096 | 63.6495 | 490 | 46 | 490 | 12 | 10 | 83.3333 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | het | 98.2995 | 98.9997 | 97.6091 | 90.8150 | 3266 | 33 | 3266 | 80 | 16 | 20.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 87.6933 | 79.6065 | 97.6088 | 41.6096 | 4329 | 1109 | 4327 | 106 | 105 | 99.0566 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.7263 | 90.1408 | 97.6087 | 73.5936 | 448 | 49 | 449 | 11 | 8 | 72.7273 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | * | 97.3294 | 97.0522 | 97.6082 | 98.7845 | 856 | 26 | 857 | 21 | 7 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1429 | 96.6825 | 97.6077 | 61.5809 | 204 | 7 | 204 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1429 | 96.6825 | 97.6077 | 63.0742 | 204 | 7 | 204 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | * | 97.1070 | 96.6121 | 97.6070 | 79.3678 | 29572 | 1037 | 29572 | 725 | 231 | 31.8621 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6356 | 99.6862 | 97.6069 | 67.4063 | 18109 | 57 | 18109 | 444 | 421 | 94.8198 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6356 | 99.6862 | 97.6069 | 67.4063 | 18109 | 57 | 18109 | 444 | 421 | 94.8198 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | het | 98.3066 | 99.0166 | 97.6068 | 90.7462 | 3222 | 32 | 3222 | 79 | 16 | 20.2532 | |
| ckim-gatk | SNP | * | map_l150_m1_e0 | * | 80.0337 | 67.8232 | 97.6062 | 88.0251 | 20760 | 9849 | 20754 | 509 | 42 | 8.2515 | |
| ckim-gatk | SNP | ti | map_l250_m2_e0 | * | 71.3054 | 56.1701 | 97.6058 | 96.1011 | 2813 | 2195 | 2813 | 69 | 9 | 13.0435 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6882 | 97.7707 | 97.6057 | 78.5372 | 1228 | 28 | 1223 | 30 | 9 | 30.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.1359 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.2703 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 96.4497 | 95.3216 | 97.6048 | 94.7698 | 163 | 8 | 163 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | homalt | 95.4612 | 93.4097 | 97.6048 | 81.5368 | 326 | 23 | 326 | 8 | 1 | 12.5000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9086 | 98.2143 | 97.6048 | 77.2169 | 165 | 3 | 163 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 89.0921 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.5258 | 62.9344 | 97.6048 | 68.0077 | 163 | 96 | 163 | 4 | 3 | 75.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | * | 88.3659 | 80.7254 | 97.6039 | 81.5961 | 20208 | 4825 | 20204 | 496 | 17 | 3.4274 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| qzeng-custom | INDEL | D1_5 | segdup | het | 98.1482 | 98.6994 | 97.6032 | 95.6595 | 683 | 9 | 733 | 18 | 4 | 22.2222 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7538 | 99.9318 | 97.6032 | 55.4303 | 1465 | 1 | 1466 | 36 | 19 | 52.7778 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | * | 97.6146 | 97.6263 | 97.6030 | 66.9174 | 1604 | 39 | 1588 | 39 | 28 | 71.7949 | |
| ndellapenna-hhga | INDEL | * | map_siren | het | 97.8580 | 98.1145 | 97.6028 | 80.6313 | 4423 | 85 | 4438 | 109 | 50 | 45.8716 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7513 | 99.9277 | 97.6023 | 62.0856 | 1382 | 1 | 1384 | 34 | 31 | 91.1765 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e0 | * | 97.7110 | 97.8206 | 97.6017 | 69.6113 | 72352 | 1612 | 72358 | 1778 | 689 | 38.7514 | |
| ckim-gatk | SNP | * | map_l150_m2_e1 | * | 80.8459 | 69.0003 | 97.6016 | 88.7044 | 22225 | 9985 | 22219 | 546 | 44 | 8.0586 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | * | 98.2503 | 98.9080 | 97.6013 | 79.0121 | 11231 | 124 | 11230 | 276 | 27 | 9.7826 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.2085 | 91.0448 | 97.6000 | 62.4906 | 488 | 48 | 488 | 12 | 10 | 83.3333 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8254 | 96.0630 | 97.6000 | 79.5417 | 122 | 5 | 122 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.2085 | 91.0448 | 97.6000 | 62.4906 | 488 | 48 | 488 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | * | 94.4016 | 91.4062 | 97.6000 | 88.7691 | 117 | 11 | 122 | 3 | 1 | 33.3333 | |