PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30751-30800 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | ti | segdup | het | 98.6041 | 99.5428 | 97.6830 | 94.4043 | 11975 | 55 | 11973 | 284 | 5 | 1.7606 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4762 | 95.2989 | 97.6829 | 51.6687 | 21204 | 1046 | 21205 | 503 | 474 | 94.2346 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8278 | 100.0000 | 97.6827 | 39.6904 | 2738 | 0 | 2740 | 65 | 42 | 64.6154 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | het | 98.5164 | 99.3647 | 97.6826 | 91.1394 | 5161 | 33 | 5016 | 119 | 8 | 6.7227 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | * | 97.1993 | 96.7213 | 97.6821 | 93.5570 | 2065 | 70 | 2065 | 49 | 15 | 30.6122 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4130 | 97.1455 | 97.6820 | 62.4233 | 42098 | 1237 | 41887 | 994 | 949 | 95.4728 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2419 | 94.8438 | 97.6819 | 61.2333 | 5040 | 274 | 6110 | 145 | 131 | 90.3448 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.7466 | 91.9826 | 97.6819 | 48.8321 | 2742 | 239 | 2739 | 65 | 51 | 78.4615 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.0717 | 78.5417 | 97.6804 | 73.6054 | 377 | 103 | 379 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | * | 95.8862 | 94.1573 | 97.6798 | 38.6040 | 419 | 26 | 421 | 10 | 8 | 80.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 97.0895 | 96.5074 | 97.6787 | 87.4226 | 1050 | 38 | 1052 | 25 | 5 | 20.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0478 | 92.5550 | 97.6786 | 60.5911 | 1094 | 88 | 1094 | 26 | 23 | 88.4615 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.0746 | 98.4739 | 97.6786 | 54.4653 | 24972 | 387 | 25036 | 595 | 449 | 75.4622 | |
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | * | 97.3075 | 96.9399 | 97.6780 | 89.1719 | 2566 | 81 | 2566 | 61 | 14 | 22.9508 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | het | 96.1556 | 94.6801 | 97.6778 | 86.3185 | 1317 | 74 | 1346 | 32 | 2 | 6.2500 | |
| hfeng-pmm2 | INDEL | * | map_l100_m2_e1 | het | 98.0684 | 98.4635 | 97.6764 | 86.2047 | 2307 | 36 | 2312 | 55 | 7 | 12.7273 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3954 | 99.1251 | 97.6764 | 86.9350 | 1133 | 10 | 1135 | 27 | 4 | 14.8148 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | * | 98.3564 | 99.0460 | 97.6764 | 72.0101 | 74024 | 713 | 74027 | 1761 | 324 | 18.3986 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | het | 97.8863 | 98.0978 | 97.6758 | 52.4481 | 20370 | 395 | 20424 | 486 | 392 | 80.6584 | |
| jmaeng-gatk | SNP | ti | map_l125_m0_e0 | * | 77.0171 | 63.5715 | 97.6758 | 88.7194 | 8113 | 4649 | 8111 | 193 | 22 | 11.3990 | |
| ndellapenna-hhga | INDEL | * | * | * | 97.3838 | 97.0938 | 97.6756 | 75.8762 | 334529 | 10013 | 335249 | 7978 | 6638 | 83.2038 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | het | 97.9052 | 98.1362 | 97.6753 | 80.7049 | 5002 | 95 | 5000 | 119 | 1 | 0.8403 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5086 | 99.3568 | 97.6748 | 72.1675 | 5561 | 36 | 5545 | 132 | 121 | 91.6667 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7377 | 99.8240 | 97.6748 | 57.4932 | 5671 | 10 | 5671 | 135 | 133 | 98.5185 | |
| ckim-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.0959 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | * | 96.5517 | 95.4545 | 97.6744 | 88.7582 | 252 | 12 | 252 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2565 | 96.8421 | 97.6744 | 90.7527 | 92 | 3 | 84 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 43.4211 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.8361 | 97.9984 | 97.6744 | 63.8236 | 1224 | 25 | 1218 | 29 | 25 | 86.2069 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.8361 | 97.9984 | 97.6744 | 63.8236 | 1224 | 25 | 1218 | 29 | 25 | 86.2069 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6744 | 97.6744 | 97.6744 | 79.9065 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5517 | 95.4545 | 97.6744 | 93.4947 | 42 | 2 | 42 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | het | 58.8785 | 42.1405 | 97.6744 | 82.3529 | 126 | 173 | 126 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 36.7647 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8235 | 100.0000 | 97.6744 | 92.4429 | 41 | 0 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.1595 | 87.2340 | 97.6744 | 75.0000 | 41 | 6 | 42 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.8919 | 42 | 1 | 42 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.2390 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.8448 | 66.1017 | 97.6744 | 72.7848 | 39 | 20 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 92.8808 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 93.3846 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2788 | 89.2617 | 97.6744 | 69.3587 | 133 | 16 | 126 | 3 | 1 | 33.3333 | |
| jli-custom | SNP | * | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | segdup | het | 97.7502 | 97.8261 | 97.6744 | 92.4495 | 90 | 2 | 84 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.3752 | 93.1818 | 97.6744 | 77.3684 | 41 | 3 | 42 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | het | 94.5127 | 91.5493 | 97.6744 | 86.4139 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.0000 | 60.8696 | 97.6744 | 74.5562 | 42 | 27 | 42 | 1 | 1 | 100.0000 | |