PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30101-30150 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 96.4635 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | * | 94.0775 | 90.5660 | 97.8723 | 85.5385 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | * | 94.0775 | 90.5660 | 97.8723 | 87.6640 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | * | 94.0775 | 90.5660 | 97.8723 | 87.9487 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.8723 | 95.4721 | 0 | 0 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.8723 | 95.2284 | 0 | 0 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.9286 | 92.1569 | 97.8723 | 55.6604 | 94 | 8 | 92 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m0_e0 | * | 61.3333 | 44.6602 | 97.8723 | 88.9412 | 46 | 57 | 46 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e0 | * | 56.4417 | 39.6552 | 97.8723 | 91.1488 | 46 | 70 | 46 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | * | 56.4417 | 39.6552 | 97.8723 | 91.2639 | 46 | 70 | 46 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 98.9247 | 100.0000 | 97.8723 | 94.2260 | 46 | 0 | 46 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 96.4635 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e1 | homalt | 98.9247 | 100.0000 | 97.8723 | 95.2716 | 46 | 0 | 46 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4961 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4229 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.0484 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | segdup | homalt | 97.8723 | 97.8723 | 97.8723 | 92.5750 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.4619 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 90.7480 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.0476 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.9573 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 91.1488 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.3761 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 91.3284 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 92.3203 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 92.5040 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | * | homalt | 98.7463 | 99.6364 | 97.8720 | 46.7949 | 6303 | 23 | 6255 | 136 | 133 | 97.7941 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | * | 81.1449 | 69.3009 | 97.8719 | 88.3988 | 14215 | 6297 | 14211 | 309 | 34 | 11.0032 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.2567 | 96.6498 | 97.8712 | 70.9851 | 3635 | 126 | 3632 | 79 | 58 | 73.4177 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.2567 | 96.6498 | 97.8712 | 70.9851 | 3635 | 126 | 3632 | 79 | 58 | 73.4177 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | het | 98.2477 | 98.6282 | 97.8701 | 83.2230 | 2804 | 39 | 2803 | 61 | 3 | 4.9180 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.8379 | 99.8261 | 97.8691 | 37.1532 | 3444 | 6 | 3215 | 70 | 7 | 10.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | het | 97.7909 | 97.7129 | 97.8690 | 82.3415 | 1239 | 29 | 1240 | 27 | 9 | 33.3333 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6407 | 97.4133 | 97.8690 | 64.6778 | 1883 | 50 | 1883 | 41 | 41 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | * | 97.8800 | 97.8917 | 97.8683 | 82.0892 | 4086 | 88 | 4086 | 89 | 22 | 24.7191 | |
| bgallagher-sentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.5366 | 99.2141 | 97.8682 | 84.8680 | 505 | 4 | 505 | 11 | 5 | 45.4545 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.9244 | 92.1529 | 97.8678 | 75.1983 | 458 | 39 | 459 | 10 | 6 | 60.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.5168 | 99.1748 | 97.8675 | 68.3868 | 3846 | 32 | 3855 | 84 | 19 | 22.6190 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | * | 98.0737 | 98.2808 | 97.8675 | 77.6619 | 6517 | 114 | 6517 | 142 | 29 | 20.4225 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | het | 98.1822 | 98.4992 | 97.8671 | 90.6974 | 5185 | 79 | 5185 | 113 | 10 | 8.8496 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5273 | 99.1969 | 97.8668 | 72.2743 | 4817 | 39 | 4863 | 106 | 20 | 18.8679 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.5900 | 99.3241 | 97.8667 | 64.6435 | 2939 | 20 | 2936 | 64 | 4 | 6.2500 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.2359 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.3046 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.5306 | 93.3042 | 97.8659 | 82.3181 | 641 | 46 | 642 | 14 | 11 | 78.5714 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 73.1041 | 58.3425 | 97.8659 | 40.1460 | 1063 | 759 | 963 | 21 | 16 | 76.1905 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | * | 97.8010 | 97.7367 | 97.8655 | 68.4763 | 48365 | 1120 | 48370 | 1055 | 457 | 43.3175 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | het | 98.1053 | 98.3471 | 97.8648 | 84.7393 | 714 | 12 | 825 | 18 | 5 | 27.7778 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | * | 81.2473 | 69.4542 | 97.8644 | 88.4201 | 14393 | 6330 | 14389 | 314 | 34 | 10.8280 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | het | 97.7646 | 97.6654 | 97.8641 | 87.4604 | 502 | 12 | 504 | 11 | 2 | 18.1818 | |