PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29751-29800 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | map_l100_m0_e0 | homalt | 95.6349 | 93.4109 | 97.9675 | 78.7565 | 241 | 17 | 241 | 5 | 2 | 40.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.2247 | 94.5429 | 97.9675 | 63.7557 | 5977 | 345 | 5977 | 124 | 109 | 87.9032 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.2247 | 94.5429 | 97.9675 | 63.7557 | 5977 | 345 | 5977 | 124 | 109 | 87.9032 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1443 | 94.3879 | 97.9673 | 65.1092 | 2506 | 149 | 2458 | 51 | 44 | 86.2745 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0855 | 98.2042 | 97.9671 | 47.8546 | 3992 | 73 | 4048 | 84 | 36 | 42.8571 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4177 | 98.8728 | 97.9668 | 40.4008 | 7368 | 84 | 7372 | 153 | 3 | 1.9608 | |
| qzeng-custom | INDEL | D1_5 | map_siren | * | 93.2868 | 89.0337 | 97.9666 | 83.5685 | 3142 | 387 | 3228 | 67 | 43 | 64.1791 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8687 | 99.7876 | 97.9666 | 56.5178 | 3758 | 8 | 3758 | 78 | 76 | 97.4359 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8687 | 99.7876 | 97.9666 | 56.5178 | 3758 | 8 | 3758 | 78 | 76 | 97.4359 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.1107 | 96.2703 | 97.9659 | 43.0945 | 17578 | 681 | 17579 | 365 | 348 | 95.3425 | |
| astatham-gatk | INDEL | * | map_l125_m2_e1 | * | 96.4891 | 95.0562 | 97.9658 | 89.1866 | 2115 | 110 | 2119 | 44 | 9 | 20.4545 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.2050 | 96.4561 | 97.9656 | 65.7923 | 626 | 23 | 626 | 13 | 12 | 92.3077 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4920 | 97.0234 | 97.9652 | 58.1135 | 17145 | 526 | 17140 | 356 | 338 | 94.9438 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.4920 | 97.0234 | 97.9652 | 58.1135 | 17145 | 526 | 17140 | 356 | 338 | 94.9438 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | het | 97.6774 | 97.3913 | 97.9651 | 86.4780 | 336 | 9 | 337 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.4555 | 96.9512 | 97.9651 | 38.5714 | 318 | 10 | 337 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | het | 95.8207 | 93.7687 | 97.9645 | 83.6078 | 2197 | 146 | 2262 | 47 | 8 | 17.0213 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | het | 98.1708 | 98.3781 | 97.9644 | 87.4166 | 2305 | 38 | 2310 | 48 | 10 | 20.8333 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | het | 78.6935 | 65.7581 | 97.9644 | 91.7001 | 386 | 201 | 385 | 8 | 2 | 25.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.4511 | 98.9430 | 97.9639 | 73.8833 | 1685 | 18 | 1684 | 35 | 28 | 80.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e0 | het | 98.6087 | 99.2624 | 97.9636 | 91.2085 | 3230 | 24 | 3175 | 66 | 4 | 6.0606 | |
| rpoplin-dv42 | INDEL | D6_15 | * | * | 97.4536 | 96.9493 | 97.9633 | 52.8335 | 25296 | 796 | 25300 | 526 | 501 | 95.2471 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.7788 | 88.1157 | 97.9631 | 52.0232 | 3077 | 415 | 3078 | 64 | 61 | 95.3125 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | het | 95.9196 | 93.9597 | 97.9629 | 82.4460 | 2100 | 135 | 2164 | 45 | 7 | 15.5556 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | het | 84.2890 | 73.9650 | 97.9626 | 86.2811 | 1733 | 610 | 1731 | 36 | 15 | 41.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 90.4534 | 84.0140 | 97.9620 | 90.4179 | 720 | 137 | 721 | 15 | 1 | 6.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 86.2768 | 77.0823 | 97.9619 | 72.5253 | 1490 | 443 | 1490 | 31 | 29 | 93.5484 | |
| jpowers-varprowl | INDEL | * | segdup | homalt | 93.9252 | 90.2083 | 97.9615 | 91.6422 | 866 | 94 | 865 | 18 | 17 | 94.4444 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | het | 98.4404 | 98.9244 | 97.9610 | 90.8174 | 3219 | 35 | 3219 | 67 | 7 | 10.4478 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.5784 | 99.2038 | 97.9608 | 84.7707 | 1246 | 10 | 1249 | 26 | 4 | 15.3846 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | * | 97.2377 | 96.5254 | 97.9606 | 88.6503 | 1389 | 50 | 1393 | 29 | 5 | 17.2414 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.0372 | 96.1312 | 97.9605 | 45.4439 | 14213 | 572 | 15466 | 322 | 303 | 94.0994 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9478 | 97.9351 | 97.9605 | 73.1911 | 5976 | 126 | 5956 | 124 | 48 | 38.7097 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.7221 | 89.8362 | 97.9593 | 52.4760 | 9979 | 1129 | 12193 | 254 | 153 | 60.2362 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1813 | 92.5566 | 97.9592 | 89.7023 | 286 | 23 | 288 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.8107 | 95.6887 | 97.9592 | 87.0443 | 910 | 41 | 912 | 19 | 14 | 73.6842 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | het | 97.3655 | 96.7790 | 97.9592 | 85.1598 | 1292 | 43 | 1296 | 27 | 3 | 11.1111 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.3309 | 96.7105 | 97.9592 | 91.2343 | 147 | 5 | 144 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.3418 | 37.6000 | 97.9592 | 37.9747 | 47 | 78 | 48 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.8938 | 71.8447 | 97.9592 | 42.5781 | 148 | 58 | 144 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5284 | 97.1014 | 97.9592 | 87.5680 | 335 | 10 | 336 | 7 | 1 | 14.2857 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | hetalt | 79.3388 | 66.6667 | 97.9592 | 73.6559 | 48 | 24 | 48 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.9695 | 92.1569 | 97.9592 | 89.3478 | 47 | 4 | 48 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.3469 | 83.8323 | 97.9592 | 70.6587 | 140 | 27 | 144 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.3998 | 96.8468 | 97.9592 | 88.0465 | 645 | 21 | 624 | 13 | 6 | 46.1538 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.3998 | 96.8468 | 97.9592 | 88.0465 | 645 | 21 | 624 | 13 | 6 | 46.1538 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 97.9592 | 95.8858 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.0042 | 73.5294 | 97.9592 | 95.6328 | 50 | 18 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5327 | 97.1098 | 97.9592 | 67.3333 | 336 | 10 | 336 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 97.9592 | 95.9184 | 0 | 0 | 96 | 2 | 2 | 100.0000 | |