PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2851-2900 / 86044 show all
ltrigg-rtg1SNP*map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
71.0145
2002000
ltrigg-rtg1SNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
85.1852
40400
ltrigg-rtg1SNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
83.3333
50500
ltrigg-rtg1SNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
83.3333
50500
ltrigg-rtg1SNP*segduphetalt
100.0000
100.0000
100.0000
96.9027
70700
ltrigg-rtg1SNP*tech_badpromotershomalt
99.3711
98.7500
100.0000
48.7013
7917900
ltrigg-rtg1SNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
20.9016
578157900
ltrigg-rtg1SNPtifunc_cdshetalt
100.0000
100.0000
100.0000
46.6667
80800
ltrigg-rtg1SNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.7187
52732527300
ltrigg-rtg1SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
87.5000
00100
ltrigg-rtg1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
83.3333
51600
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7779
99.5567
100.0000
51.3978
11235113000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8976
99.7954
100.0000
44.6809
14633148200
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9417
99.8834
100.0000
47.3652
857186900
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.4545
91.3043
100.0000
88.1481
6366400
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10200
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.8136
95.7207
100.0000
80.1285
4251940200
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10200
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.1383
96.3446
100.0000
78.0038
3691434600
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.6552
20300
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4592
98.9243
100.0000
76.3325
239126238900
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
90.9091
10100
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.5238
99.0521
100.0000
59.3712
167216168000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
0.0000
00100
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
94.0476
51500
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8635
99.7274
100.0000
40.2446
21956219900
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
90.0000
10100
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
94.6429
71600
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.8980
60500
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
92.8571
11100
ltrigg-rtg1SNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
61.1111
1401400
ltrigg-rtg1SNPtimap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
64.6341
2902900
ltrigg-rtg1SNPtimap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
66.2921
3003000
ltrigg-rtg1SNPtimap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
65.5556
3103100
ltrigg-rtg1SNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
68.0000
80800
ltrigg-rtg1SNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
58.6207
2402400
ltrigg-rtg1SNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
63.6364
2402400
ltrigg-rtg1SNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
63.6364
2402400
ltrigg-rtg1SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
81.2500
30300
ltrigg-rtg1SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
65.1163
1501500
ltrigg-rtg1SNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
68.0851
1501500
ltrigg-rtg1SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
68.7500
1501500
ltrigg-rtg1SNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
77.7778
40400
ltrigg-rtg1SNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
75.0000
50500
ltrigg-rtg1SNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
75.0000
50500
ltrigg-rtg1SNPtisegduphetalt
100.0000
100.0000
100.0000
98.6577
20200
ltrigg-rtg1SNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
41.4286
4104100