PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28601-28650 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7191 | 97.1983 | 98.2456 | 71.4465 | 451 | 13 | 448 | 8 | 7 | 87.5000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | het | 98.1285 | 98.0117 | 98.2456 | 88.8001 | 838 | 17 | 840 | 15 | 4 | 26.6667 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.8158 | 112 | 3 | 112 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e0 | het | 94.9153 | 91.8033 | 98.2456 | 88.2231 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 88.4146 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.6000 | 82.3529 | 98.2456 | 96.4128 | 56 | 12 | 56 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4775 | 96.7213 | 98.2456 | 75.2174 | 59 | 2 | 56 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 95.7265 | 93.3333 | 98.2456 | 96.0798 | 56 | 4 | 56 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9225 | 84.6154 | 98.2456 | 43.0000 | 11 | 2 | 56 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.7441 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7788 | 99.3179 | 98.2456 | 73.2684 | 728 | 5 | 728 | 13 | 13 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.0126 | 79.7101 | 98.2456 | 58.3942 | 55 | 14 | 56 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_siren | hetalt | 98.2456 | 98.2456 | 98.2456 | 70.4663 | 56 | 1 | 56 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | homalt | 98.4183 | 98.5915 | 98.2456 | 88.1645 | 280 | 4 | 280 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.3913 | 96.5517 | 98.2456 | 95.5277 | 112 | 4 | 112 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2751 | 94.3820 | 98.2456 | 64.3006 | 168 | 10 | 168 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.4326 | 66.6667 | 98.2456 | 72.4638 | 56 | 28 | 56 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.1150 | 100.0000 | 98.2456 | 80.1394 | 5 | 0 | 56 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | het | 85.0633 | 75.0000 | 98.2456 | 77.4704 | 45 | 15 | 56 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.1595 | 78.3217 | 98.2456 | 92.8750 | 112 | 31 | 112 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_siren | hetalt | 98.2456 | 98.2456 | 98.2456 | 65.4545 | 56 | 1 | 56 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.8773 | 71.6667 | 98.2456 | 94.4714 | 43 | 17 | 56 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9910 | 61.9565 | 98.2456 | 60.6897 | 57 | 35 | 56 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.5108 | 62.6506 | 98.2456 | 36.6667 | 52 | 31 | 56 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 95.1136 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | homalt | 98.4183 | 98.5915 | 98.2456 | 87.8361 | 280 | 4 | 280 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | hetalt | 61.5385 | 44.8000 | 98.2456 | 86.6822 | 56 | 69 | 56 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | het | 96.5517 | 94.9153 | 98.2456 | 91.6176 | 56 | 3 | 56 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | homalt | 70.4403 | 54.9020 | 98.2456 | 86.5882 | 112 | 92 | 112 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 94.9153 | 91.8033 | 98.2456 | 85.7143 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 85.9606 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9697 | 95.7265 | 98.2456 | 91.4286 | 112 | 5 | 112 | 2 | 1 | 50.0000 | |
| mlin-fermikit | SNP | tv | map_siren | het | 80.8694 | 68.7161 | 98.2452 | 51.7745 | 19659 | 8950 | 19651 | 351 | 3 | 0.8547 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e0 | het | 98.1499 | 98.0554 | 98.2446 | 88.1117 | 5093 | 101 | 5093 | 91 | 56 | 61.5385 | |
| mlin-fermikit | SNP | * | map_l125_m1_e0 | het | 60.7541 | 43.9737 | 98.2445 | 60.8741 | 12485 | 15907 | 12480 | 223 | 8 | 3.5874 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4013 | 98.5588 | 98.2442 | 73.3744 | 1231 | 18 | 1231 | 22 | 15 | 68.1818 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4013 | 98.5588 | 98.2442 | 73.3744 | 1231 | 18 | 1231 | 22 | 15 | 68.1818 | |
| mlin-fermikit | SNP | tv | segdup | homalt | 98.3960 | 98.5485 | 98.2440 | 87.6277 | 3191 | 47 | 3189 | 57 | 49 | 85.9649 | |
| bgallagher-sentieon | INDEL | D6_15 | * | * | 98.0100 | 97.7771 | 98.2439 | 54.8211 | 25512 | 580 | 25511 | 456 | 416 | 91.2281 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6299 | 97.0238 | 98.2437 | 83.5797 | 1793 | 55 | 1790 | 32 | 6 | 18.7500 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7581 | 95.3172 | 98.2432 | 76.2972 | 631 | 31 | 727 | 13 | 8 | 61.5385 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0520 | 99.8745 | 98.2429 | 45.7715 | 10344 | 13 | 10344 | 185 | 181 | 97.8378 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5296 | 98.8181 | 98.2427 | 79.9696 | 4097 | 49 | 4137 | 74 | 2 | 2.7027 | |
| ckim-gatk | SNP | * | map_siren | het | 95.8468 | 93.5653 | 98.2423 | 71.0090 | 85136 | 5855 | 85122 | 1523 | 109 | 7.1569 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7242 | 99.2110 | 98.2422 | 85.7580 | 503 | 4 | 503 | 9 | 2 | 22.2222 | |
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | hetalt | 87.9228 | 79.5656 | 98.2415 | 48.4281 | 806 | 207 | 838 | 15 | 15 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 91.2346 | 85.1608 | 98.2412 | 87.9589 | 1165 | 203 | 1173 | 21 | 4 | 19.0476 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.9719 | 93.8052 | 98.2411 | 42.7766 | 6481 | 428 | 6479 | 116 | 88 | 75.8621 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | * | 97.9825 | 97.7253 | 98.2410 | 85.7697 | 1117 | 26 | 1117 | 20 | 8 | 40.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.3587 | 92.6421 | 98.2394 | 90.9091 | 277 | 22 | 279 | 5 | 0 | 0.0000 | |