PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2701-2750 / 86044 show all
jmaeng-gatkSNPtvmap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNPtvmap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNPtvsegduphetalt
100.0000
100.0000
100.0000
98.5685
70700
jmaeng-gatkSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
47.5410
3213200
jpowers-varprowlINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9173
30300
jpowers-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
33.3333
20.0000
100.0000
99.8894
14100
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
40.0000
25.0000
100.0000
99.8862
13100
jpowers-varprowlINDEL*map_l250_m0_e0homalt
93.6170
88.0000
100.0000
97.7390
2232200
jpowers-varprowlINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9972
10100
jpowers-varprowlINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9963
10100
jpowers-varprowlINDEL*tech_badpromotershomalt
80.0000
66.6667
100.0000
59.2593
22112200
jpowers-varprowlINDELD16_PLUSdecoy*
90.9091
83.3333
100.0000
99.1482
51500
jpowers-varprowlINDELD16_PLUSdecoyhet
85.7143
75.0000
100.0000
99.4208
31300
jpowers-varprowlINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
97.1014
20200
jpowers-varprowlINDELD16_PLUSfunc_cdshomalt
85.7143
75.0000
100.0000
66.6667
31300
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
40.7407
25.5814
100.0000
84.1549
441284500
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
66.2963
49.5845
100.0000
63.9279
17918218000
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
79.4286
65.8768
100.0000
53.6667
1397213900
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
68.5714
52.1739
100.0000
94.6188
12111200
jpowers-varprowlINDELD16_PLUSmap_l100_m0_e0homalt
88.8889
80.0000
100.0000
99.2233
41400
jpowers-varprowlINDELD16_PLUSmap_l100_m1_e0homalt
69.5652
53.3333
100.0000
98.5841
87800
jpowers-varprowlINDELD16_PLUSmap_l100_m2_e0homalt
72.0000
56.2500
100.0000
98.4375
97900
jpowers-varprowlINDELD16_PLUSmap_l100_m2_e1homalt
72.0000
56.2500
100.0000
98.4402
97900
jpowers-varprowlINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
99.5842
20200
jpowers-varprowlINDELD16_PLUSmap_l125_m1_e0homalt
85.7143
75.0000
100.0000
99.4106
31300
jpowers-varprowlINDELD16_PLUSmap_l125_m2_e0homalt
85.7143
75.0000
100.0000
99.4163
31300
jpowers-varprowlINDELD16_PLUSmap_l125_m2_e1homalt
85.7143
75.0000
100.0000
99.4163
31300
jpowers-varprowlINDELD16_PLUSmap_l150_m0_e0*
100.0000
100.0000
100.0000
99.3665
70700
jpowers-varprowlINDELD16_PLUSmap_l150_m0_e0het
100.0000
100.0000
100.0000
98.9231
70700
jpowers-varprowlINDELD16_PLUSmap_l250_m0_e0*
100.0000
100.0000
100.0000
99.8624
10100
jpowers-varprowlINDELD16_PLUSmap_l250_m0_e0het
100.0000
100.0000
100.0000
99.7567
10100
jpowers-varprowlINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
99.7475
10100
jpowers-varprowlINDELD16_PLUSmap_l250_m2_e1homalt
100.0000
100.0000
100.0000
99.7500
10100
jpowers-varprowlINDELD16_PLUSmap_sirenhomalt
64.0000
47.0588
100.0000
97.5309
16181600
jpowers-varprowlINDELD16_PLUSsegduphomalt
90.9091
83.3333
100.0000
93.6709
1021000
jpowers-varprowlINDELD16_PLUStech_badpromoters*
66.6667
50.0000
100.0000
50.0000
22200
jpowers-varprowlINDELD16_PLUStech_badpromotershet
66.6667
50.0000
100.0000
0.0000
22200
jpowers-varprowlINDELD1_5decoy*
85.7143
75.0000
100.0000
99.9682
31300
jpowers-varprowlINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9748
20200
jpowers-varprowlINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9330
10100
jpowers-varprowlINDELD1_5func_cdshomalt
92.7536
86.4865
100.0000
23.8095
64106400
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.7416
11100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.7319
11100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.6486
10100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3333
10100
jpowers-varprowlINDELD1_5map_l250_m0_e0homalt
91.6667
84.6154
100.0000
97.0976
1121100
jpowers-varprowlINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9938
10100
jpowers-varprowlINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9920
10100
jpowers-varprowlINDELD1_5tech_badpromotershomalt
80.0000
66.6667
100.0000
40.0000
63600
jpowers-varprowlINDELD6_15func_cdshomalt
80.0000
66.6667
100.0000
60.0000
84800