PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27101-27150 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.4570 | 88.8571 | 98.5591 | 32.4903 | 311 | 39 | 342 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.4375 | 78.5714 | 98.5591 | 89.4013 | 286 | 78 | 342 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1304 | 99.7085 | 98.5591 | 85.6966 | 342 | 1 | 342 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | het | 98.7395 | 98.9207 | 98.5590 | 73.8046 | 18881 | 206 | 18877 | 276 | 3 | 1.0870 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6091 | 98.6593 | 98.5590 | 59.0674 | 7285 | 99 | 7250 | 106 | 103 | 97.1698 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 63.6157 | 46.9649 | 98.5586 | 37.4295 | 588 | 664 | 547 | 8 | 6 | 75.0000 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | * | 98.2978 | 98.0385 | 98.5584 | 58.5437 | 5198 | 104 | 5196 | 76 | 69 | 90.7895 | |
| astatham-gatk | INDEL | * | segdup | * | 98.7115 | 98.8654 | 98.5581 | 94.6872 | 2527 | 29 | 2529 | 37 | 10 | 27.0270 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.6945 | 66.8919 | 98.5577 | 39.0625 | 99 | 49 | 615 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.8469 | 95.1945 | 98.5577 | 43.0137 | 416 | 21 | 410 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | * | 98.8263 | 99.0968 | 98.5573 | 80.5178 | 7790 | 71 | 7788 | 114 | 20 | 17.5439 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | * | 97.6365 | 96.7330 | 98.5570 | 88.7837 | 1362 | 46 | 1366 | 20 | 4 | 20.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | * | 95.2820 | 92.2179 | 98.5567 | 87.0112 | 474 | 40 | 478 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | I1_5 | segdup | homalt | 99.1688 | 99.7886 | 98.5567 | 91.3377 | 472 | 1 | 478 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9157 | 97.2833 | 98.5564 | 70.7710 | 752 | 21 | 751 | 11 | 10 | 90.9091 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | * | 97.5871 | 96.6368 | 98.5562 | 87.8193 | 1293 | 45 | 1297 | 19 | 4 | 21.0526 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | het | 97.5959 | 96.6543 | 98.5560 | 94.9814 | 520 | 18 | 546 | 8 | 1 | 12.5000 | |
| anovak-vg | SNP | tv | func_cds | het | 97.9570 | 97.3654 | 98.5557 | 42.0612 | 2587 | 70 | 2593 | 38 | 21 | 55.2632 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8622 | 99.1709 | 98.5554 | 65.0606 | 17703 | 148 | 17874 | 262 | 43 | 16.4122 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.2832 | 58.3269 | 98.5549 | 37.2051 | 753 | 538 | 682 | 10 | 8 | 80.0000 | |
| ckim-gatk | SNP | ti | map_l100_m2_e0 | * | 89.9645 | 82.7516 | 98.5549 | 78.4080 | 40516 | 8445 | 40509 | 594 | 70 | 11.7845 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7631 | 98.9728 | 98.5542 | 60.1632 | 1638 | 17 | 1636 | 24 | 21 | 87.5000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7947 | 99.0383 | 98.5524 | 55.6705 | 16271 | 158 | 31384 | 461 | 49 | 10.6291 | |
| ckim-vqsr | INDEL | I6_15 | * | * | 97.6524 | 96.7691 | 98.5520 | 52.9508 | 24021 | 802 | 24026 | 353 | 331 | 93.7677 | |
| ckim-gatk | SNP | ti | map_siren | het | 96.2259 | 94.0079 | 98.5512 | 68.8261 | 58644 | 3738 | 58635 | 862 | 83 | 9.6288 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.4015 | 72.2892 | 98.5507 | 28.8660 | 60 | 23 | 68 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.2701 | 100.0000 | 98.5507 | 70.7627 | 68 | 0 | 68 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | homalt | 98.4233 | 98.2962 | 98.5507 | 86.5115 | 750 | 13 | 748 | 11 | 6 | 54.5455 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.1049 | 91.8919 | 98.5507 | 79.7654 | 68 | 6 | 68 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 45.6693 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.4015 | 72.2892 | 98.5507 | 28.8660 | 60 | 23 | 68 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.9231 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.9194 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.1049 | 91.8919 | 98.5507 | 79.7654 | 68 | 6 | 68 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 45.6693 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9819 | 99.4169 | 98.5507 | 55.3109 | 341 | 2 | 340 | 5 | 3 | 60.0000 | |
| egarrison-hhga | SNP | ti | HG002complexvar | hetalt | 98.5507 | 98.5507 | 98.5507 | 42.1788 | 204 | 3 | 204 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | * | 97.9722 | 97.4005 | 98.5507 | 83.3204 | 3597 | 96 | 3604 | 53 | 13 | 24.5283 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 88.2051 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.5103 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8871 | 99.2258 | 98.5507 | 63.9239 | 8331 | 65 | 8296 | 122 | 109 | 89.3443 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.5116 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 88.3838 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 45.8824 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 95.1049 | 91.8919 | 98.5507 | 88.3051 | 136 | 12 | 136 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.1429 | 95.7746 | 98.5507 | 45.8824 | 136 | 6 | 136 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 95.0454 | 91.7808 | 98.5507 | 94.0311 | 67 | 6 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7746 | 93.1507 | 98.5507 | 73.5632 | 68 | 5 | 68 | 1 | 0 | 0.0000 | |