PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26301-26350 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | het | 98.8033 | 98.8923 | 98.7144 | 71.7057 | 7142 | 80 | 7141 | 93 | 1 | 1.0753 | |
| jli-custom | INDEL | * | map_l125_m2_e1 | het | 98.3616 | 98.0114 | 98.7143 | 86.9876 | 1380 | 28 | 1382 | 18 | 4 | 22.2222 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 93.8528 | 89.4478 | 98.7142 | 36.5693 | 2365 | 279 | 2380 | 31 | 29 | 93.5484 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | het | 96.2284 | 93.8650 | 98.7138 | 84.8956 | 306 | 20 | 307 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | * | 94.8576 | 91.2913 | 98.7138 | 93.7286 | 304 | 29 | 307 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1514 | 97.5955 | 98.7136 | 53.8931 | 21715 | 535 | 21716 | 283 | 267 | 94.3463 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.6549 | 98.5965 | 98.7135 | 57.7151 | 843 | 12 | 844 | 11 | 3 | 27.2727 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.8486 | 89.4412 | 98.7128 | 45.6849 | 2465 | 291 | 2454 | 32 | 30 | 93.7500 | |
| ltrigg-rtg2 | SNP | ti | segdup | * | 99.2028 | 99.6980 | 98.7126 | 86.7471 | 19478 | 59 | 19475 | 254 | 32 | 12.5984 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.0493 | 86.2286 | 98.7126 | 25.5959 | 3281 | 524 | 3297 | 43 | 35 | 81.3953 | |
| dgrover-gatk | SNP | * | map_l150_m0_e0 | * | 98.7537 | 98.7949 | 98.7125 | 82.2666 | 11887 | 145 | 11884 | 155 | 29 | 18.7097 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 71.6889 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0288 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.1340 | 89.9614 | 98.7124 | 51.4583 | 233 | 26 | 230 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 71.7576 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0958 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 71.6889 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0288 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 72.8617 | 57.7406 | 98.7124 | 51.8595 | 690 | 505 | 690 | 9 | 9 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.4464 | 92.3899 | 98.7120 | 46.6442 | 3630 | 299 | 3602 | 47 | 34 | 72.3404 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.0960 | 89.8927 | 98.7117 | 42.9671 | 1592 | 179 | 1609 | 21 | 20 | 95.2381 | |
| rpoplin-dv42 | INDEL | * | map_siren | * | 98.4035 | 98.0972 | 98.7117 | 97.1910 | 7269 | 141 | 7279 | 95 | 49 | 51.5789 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.2891 | 92.0962 | 98.7113 | 50.7555 | 3216 | 276 | 3217 | 42 | 36 | 85.7143 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.5264 | 98.3425 | 98.7109 | 83.7230 | 534 | 9 | 536 | 7 | 3 | 42.8571 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 75.6523 | 61.3266 | 98.7108 | 36.0827 | 8441 | 5323 | 7963 | 104 | 95 | 91.3462 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3853 | 98.0620 | 98.7107 | 74.2575 | 8956 | 177 | 8958 | 117 | 19 | 16.2393 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.3853 | 98.0620 | 98.7107 | 74.2575 | 8956 | 177 | 8958 | 117 | 19 | 16.2393 | |
| ckim-dragen | INDEL | * | * | homalt | 99.2636 | 99.8234 | 98.7101 | 59.5235 | 124951 | 221 | 124887 | 1632 | 1607 | 98.4681 | |
| ckim-dragen | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 43.8406 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.3234 | 76.6990 | 98.7097 | 39.9225 | 158 | 48 | 153 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | het | 98.5825 | 98.4556 | 98.7097 | 83.9478 | 765 | 12 | 765 | 10 | 1 | 10.0000 | |
| egarrison-hhga | SNP | * | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 42.0561 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | tv | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 42.0561 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 77.5015 | 63.7949 | 98.7097 | 42.3792 | 622 | 353 | 153 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2813 | 99.8597 | 98.7097 | 43.7241 | 2135 | 3 | 2142 | 28 | 3 | 10.7143 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | het | 96.3873 | 94.1718 | 98.7097 | 75.2988 | 307 | 19 | 306 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 47.6351 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | * | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 40.9524 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 40.9524 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6866 | 94.7447 | 98.7097 | 85.9283 | 631 | 35 | 612 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.6866 | 94.7447 | 98.7097 | 85.9283 | 631 | 35 | 612 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 46.1806 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.7734 | 98.8372 | 98.7097 | 86.3987 | 765 | 9 | 765 | 10 | 5 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0291 | 99.3506 | 98.7097 | 63.5580 | 459 | 3 | 459 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 49.3464 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | het | 97.9207 | 97.1446 | 98.7093 | 76.2482 | 1633 | 48 | 1606 | 21 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | segdup | het | 99.2648 | 99.8268 | 98.7091 | 91.1291 | 17287 | 30 | 17281 | 226 | 2 | 0.8850 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6175 | 98.5267 | 98.7085 | 84.4298 | 535 | 8 | 535 | 7 | 2 | 28.5714 | |