PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26051-26100 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | * | map_l150_m2_e0 | het | 98.9689 | 99.1805 | 98.7582 | 81.1353 | 19968 | 165 | 19962 | 251 | 50 | 19.9203 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0590 | 99.3619 | 98.7579 | 70.3448 | 3737 | 24 | 3737 | 47 | 47 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0590 | 99.3619 | 98.7579 | 70.3448 | 3737 | 24 | 3737 | 47 | 47 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | homalt | 97.8462 | 96.9512 | 98.7578 | 89.5182 | 159 | 5 | 159 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 90.6644 | 83.7971 | 98.7578 | 79.4118 | 512 | 99 | 636 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | homalt | 98.9627 | 99.1684 | 98.7578 | 89.3260 | 477 | 4 | 477 | 6 | 3 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4520 | 98.1481 | 98.7578 | 86.5497 | 477 | 9 | 477 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | het | 76.0766 | 61.8677 | 98.7578 | 96.0549 | 318 | 196 | 318 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.5385 | 96.3504 | 98.7562 | 71.8093 | 396 | 15 | 397 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7016 | 98.6472 | 98.7561 | 82.9460 | 1823 | 25 | 1826 | 23 | 9 | 39.1304 | |
| cchapple-custom | INDEL | D6_15 | * | het | 98.5018 | 98.2488 | 98.7561 | 48.6146 | 11389 | 203 | 20403 | 257 | 215 | 83.6576 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | homalt | 98.8577 | 98.9605 | 98.7552 | 87.5227 | 476 | 5 | 476 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | homalt | 98.8577 | 98.9605 | 98.7552 | 88.0545 | 476 | 5 | 476 | 6 | 3 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4507 | 98.1481 | 98.7552 | 66.1041 | 212 | 4 | 238 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | * | 98.6735 | 98.5931 | 98.7541 | 82.3788 | 1822 | 26 | 1823 | 23 | 8 | 34.7826 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1298 | 99.5085 | 98.7541 | 58.9047 | 1822 | 9 | 1823 | 23 | 1 | 4.3478 | |
| bgallagher-sentieon | INDEL | * | segdup | * | 98.9462 | 99.1393 | 98.7539 | 94.5996 | 2534 | 22 | 2536 | 32 | 11 | 34.3750 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4016 | 92.2695 | 98.7539 | 72.0200 | 1301 | 109 | 1268 | 16 | 9 | 56.2500 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 81.6959 | 69.6629 | 98.7539 | 35.5422 | 186 | 81 | 317 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 80.8933 | 68.5041 | 98.7531 | 57.3514 | 4039 | 1857 | 4039 | 51 | 49 | 96.0784 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 80.8933 | 68.5041 | 98.7531 | 57.3514 | 4039 | 1857 | 4039 | 51 | 49 | 96.0784 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | het | 99.0398 | 99.3285 | 98.7528 | 76.5217 | 10058 | 68 | 10056 | 127 | 22 | 17.3228 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.2448 | 63.4300 | 98.7526 | 34.5578 | 503 | 290 | 475 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2685 | 99.7898 | 98.7526 | 38.0155 | 1424 | 3 | 1425 | 18 | 3 | 16.6667 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | homalt | 98.7526 | 98.7526 | 98.7526 | 89.0183 | 475 | 6 | 475 | 6 | 5 | 83.3333 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3038 | 99.8611 | 98.7526 | 69.4861 | 1438 | 2 | 1425 | 18 | 1 | 5.5556 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.5360 | 94.4171 | 98.7522 | 73.2347 | 575 | 34 | 554 | 7 | 4 | 57.1429 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 68.7772 | 52.7619 | 98.7522 | 77.3150 | 554 | 496 | 554 | 7 | 2 | 28.5714 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | het | 98.3404 | 97.9322 | 98.7521 | 81.2217 | 1184 | 25 | 1187 | 15 | 3 | 20.0000 | |
| jlack-gatk | INDEL | * | * | homalt | 99.2685 | 99.7907 | 98.7518 | 57.7386 | 124910 | 262 | 124923 | 1579 | 1542 | 97.6567 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | het | 98.9851 | 99.2198 | 98.7515 | 74.5484 | 10047 | 79 | 10045 | 127 | 11 | 8.6614 | |
| bgallagher-sentieon | INDEL | * | map_siren | * | 98.9031 | 99.0553 | 98.7513 | 82.8003 | 7340 | 70 | 7355 | 93 | 21 | 22.5806 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | * | 99.1809 | 99.6144 | 98.7511 | 77.4196 | 19636 | 76 | 19293 | 244 | 16 | 6.5574 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 89.6507 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 95.1807 | 91.8605 | 98.7500 | 85.1943 | 237 | 21 | 237 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | homalt | 81.1033 | 68.8073 | 98.7500 | 97.0105 | 75 | 34 | 79 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 90.6760 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002complexvar | hetalt | 59.4347 | 42.5101 | 98.7500 | 56.1644 | 105 | 142 | 158 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4061 | 98.0645 | 98.7500 | 82.6464 | 152 | 3 | 158 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | homalt | 64.7541 | 48.1707 | 98.7500 | 85.5596 | 79 | 85 | 79 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | homalt | 98.7114 | 98.6729 | 98.7500 | 83.9418 | 1264 | 17 | 1264 | 16 | 8 | 50.0000 | |
| jlack-gatk | INDEL | * | map_l150_m2_e0 | homalt | 98.6472 | 98.5447 | 98.7500 | 89.0884 | 474 | 7 | 474 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | * | 94.5527 | 90.6977 | 98.7500 | 90.1840 | 78 | 8 | 79 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | homalt | 98.6472 | 98.5447 | 98.7500 | 88.7981 | 474 | 7 | 474 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | SNP | * | tech_badpromoters | homalt | 98.7500 | 98.7500 | 98.7500 | 50.9202 | 79 | 1 | 79 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5422 | 96.3636 | 98.7500 | 90.1356 | 159 | 6 | 158 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | * | 99.0596 | 99.3711 | 98.7500 | 26.2673 | 158 | 1 | 158 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | SNP | * | tech_badpromoters | homalt | 98.7500 | 98.7500 | 98.7500 | 50.6173 | 79 | 1 | 79 | 1 | 1 | 100.0000 | |