PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2551-2600 / 86044 show all
jli-customSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
77.9412
1501500
jli-customSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
86.6667
40400
jli-customSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
85.2941
50500
jli-customSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
85.2941
50500
jli-customSNPtisegduphetalt
100.0000
100.0000
100.0000
98.7500
20200
jli-customSNPtitech_badpromotershet
98.8506
97.7273
100.0000
46.9136
4314300
jli-customSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
36.8852
308230800
jli-customSNPtvHG002compoundhethetalt
99.8839
99.7680
100.0000
23.0769
860286000
jli-customSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
jli-customSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.8014
17040170400
jli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
65.9727
523152300
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.6087
1211200
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
88.6364
1501500
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
48.9384
481048100
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.0839
786078600
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.2489
525052500
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
92.0319
4014000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.8776
30300
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
88.6364
1501500
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7731
99.5473
100.0000
61.6441
17598175900
jli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200*
98.0392
96.1538
100.0000
96.8434
2512500
jli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200het
96.9697
94.1176
100.0000
97.2835
1611600
jli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.5224
90900
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.5484
60600
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.7458
13092130900
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5915
10100
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2759
10100
jli-customSNPtvmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
79.0698
90900
jli-customSNPtvmap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
74.1379
3003000
jli-customSNPtvmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNPtvmap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
91.1765
30300
jli-customSNPtvmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
78.4946
2002000
jli-customSNPtvmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNPtvmap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
91.8367
40400
jli-customSNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.1429
70700
jli-customSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
54.9296
3213200
jmaeng-gatkINDEL*decoy*
100.0000
100.0000
100.0000
99.9727
1001000
jmaeng-gatkINDEL*decoyhet
100.0000
100.0000
100.0000
99.9809
60600
jmaeng-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8525
10100