PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2401-2450 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | segdup | homalt | 84.8485 | 73.6842 | 100.0000 | 82.3529 | 14 | 5 | 15 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 98.2456 | 6 | 21 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 1 | 1 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.1353 | 8 | 1 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | homalt | 86.9565 | 76.9231 | 100.0000 | 64.2857 | 10 | 3 | 10 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 33.3333 | 12 | 3 | 12 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5926 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 93.3333 | 3 | 4 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 94.7368 | 3 | 4 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.4286 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.5517 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 6 | 0 | 6 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.9697 | 8 | 1 | 8 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 56.8182 | 38 | 1 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | decoy | * | 94.7368 | 90.0000 | 100.0000 | 99.8991 | 9 | 1 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.8908 | 5 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8440 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9201 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 75.0000 | 4 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | func_cds | homalt | 99.7783 | 99.5575 | 100.0000 | 30.7692 | 225 | 1 | 225 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9310 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6795 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7849 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7778 | 99.5565 | 100.0000 | 70.0067 | 1347 | 6 | 1341 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 95.7447 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.7419 | 78.1609 | 100.0000 | 99.8911 | 68 | 19 | 68 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 95.0000 | 90.4762 | 100.0000 | 99.9546 | 19 | 2 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.9580 | 90.4000 | 100.0000 | 36.3128 | 113 | 12 | 114 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.9610 | 47 | 0 | 47 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.6197 | 10 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 94.8579 | 36 | 4 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 95.2670 | 37 | 5 | 39 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 95.3349 | 37 | 6 | 39 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 96.5278 | 8 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.5889 | 18 | 3 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.9745 | 18 | 3 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 96.8750 | 19 | 4 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9977 | 25 | 0 | 26 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4802 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7013 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7277 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | segdup | hetalt | 95.1613 | 90.7692 | 100.0000 | 95.6911 | 118 | 12 | 125 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9964 | 1 | 0 | 1 | 0 | 0 | ||