PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24001-24050 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.2606 | 99.4444 | 99.0775 | 82.2062 | 537 | 3 | 537 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3427 | 99.6095 | 99.0772 | 37.9144 | 18112 | 71 | 18145 | 169 | 3 | 1.7752 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.6161 | 98.1595 | 99.0769 | 84.9885 | 320 | 6 | 322 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | map_siren | * | 99.4355 | 99.7967 | 99.0768 | 57.9702 | 100151 | 204 | 97874 | 912 | 55 | 6.0307 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.0868 | 99.0968 | 99.0767 | 50.8276 | 10313 | 94 | 10302 | 96 | 89 | 92.7083 | |
| hfeng-pmm3 | SNP | ti | map_l150_m0_e0 | het | 99.0183 | 98.9602 | 99.0764 | 81.1323 | 5044 | 53 | 5042 | 47 | 2 | 4.2553 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0989 | 95.1988 | 99.0764 | 32.0722 | 17310 | 873 | 17379 | 162 | 93 | 57.4074 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | het | 99.2944 | 99.5135 | 99.0763 | 71.7035 | 15342 | 75 | 15338 | 143 | 24 | 16.7832 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8479 | 98.6207 | 99.0762 | 86.8887 | 858 | 12 | 858 | 8 | 1 | 12.5000 | |
| gduggal-bwavard | SNP | tv | HG002complexvar | het | 98.2582 | 97.4538 | 99.0760 | 23.1907 | 146896 | 3838 | 144431 | 1347 | 888 | 65.9243 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.1674 | 99.2593 | 99.0758 | 83.1779 | 536 | 4 | 536 | 5 | 2 | 40.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4328 | 99.7924 | 99.0758 | 46.4998 | 6730 | 14 | 6754 | 63 | 6 | 9.5238 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.1674 | 99.2593 | 99.0758 | 82.1511 | 536 | 4 | 536 | 5 | 3 | 60.0000 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.0453 | 99.0148 | 99.0758 | 65.2537 | 3216 | 32 | 3216 | 30 | 7 | 23.3333 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | * | 99.1246 | 99.1738 | 99.0754 | 71.0207 | 30008 | 250 | 30004 | 280 | 11 | 3.9286 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002compoundhet | * | 95.5047 | 92.1828 | 99.0749 | 28.5997 | 2158 | 183 | 2142 | 20 | 20 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.3316 | 99.5905 | 99.0741 | 54.4458 | 2675 | 11 | 2675 | 25 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.2310 | 99.3884 | 99.0741 | 82.8662 | 325 | 2 | 321 | 3 | 1 | 33.3333 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9405 | 96.8326 | 99.0741 | 91.2409 | 214 | 7 | 214 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdup | het | 99.1652 | 99.2565 | 99.0741 | 95.4899 | 534 | 4 | 535 | 5 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | homalt | 98.6175 | 98.1651 | 99.0741 | 95.2880 | 107 | 2 | 107 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2727 | 95.5357 | 99.0741 | 87.9867 | 107 | 5 | 107 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | func_cds | het | 99.0697 | 99.0654 | 99.0741 | 46.6667 | 212 | 2 | 214 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | hetalt | 99.5349 | 100.0000 | 99.0741 | 73.5941 | 30 | 0 | 107 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 99.0741 | 92.0118 | 0 | 0 | 107 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | het | 79.2593 | 66.0494 | 99.0741 | 94.2776 | 321 | 165 | 321 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.2230 | 56.8228 | 99.0741 | 25.0000 | 279 | 212 | 107 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2727 | 95.5357 | 99.0741 | 72.3785 | 107 | 5 | 107 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.0741 | 99.0741 | 99.0741 | 82.5186 | 535 | 5 | 535 | 5 | 3 | 60.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9405 | 96.8326 | 99.0741 | 91.0854 | 214 | 7 | 214 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | func_cds | het | 99.0697 | 99.0654 | 99.0741 | 49.1765 | 212 | 2 | 214 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | map_siren | * | 98.7281 | 98.3847 | 99.0739 | 58.8371 | 98734 | 1621 | 98737 | 923 | 255 | 27.6273 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 73.8603 | 58.8768 | 99.0735 | 33.2105 | 4812 | 3361 | 4491 | 42 | 36 | 85.7143 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6256 | 98.1818 | 99.0734 | 84.3863 | 1242 | 23 | 1283 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | * | homalt | 89.7870 | 82.0922 | 99.0734 | 63.7561 | 1389 | 303 | 1390 | 13 | 11 | 84.6154 | |
| qzeng-custom | SNP | ti | map_siren | * | 92.5421 | 86.8188 | 99.0732 | 61.8902 | 87127 | 13228 | 86370 | 808 | 570 | 70.5446 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.7008 | 92.5507 | 99.0729 | 30.3936 | 3193 | 257 | 3206 | 30 | 24 | 80.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | * | 98.9506 | 98.8287 | 99.0728 | 74.8529 | 11222 | 133 | 11220 | 105 | 61 | 58.0952 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6957 | 98.3216 | 99.0726 | 47.6211 | 10896 | 186 | 10896 | 102 | 98 | 96.0784 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | het | 94.4773 | 90.2896 | 99.0724 | 78.4572 | 530 | 57 | 534 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | homalt | 99.4179 | 99.7664 | 99.0719 | 87.2692 | 854 | 2 | 854 | 8 | 4 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | homalt | 99.4179 | 99.7664 | 99.0719 | 87.2031 | 854 | 2 | 854 | 8 | 4 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7656 | 98.4611 | 99.0719 | 67.7717 | 3839 | 60 | 3843 | 36 | 22 | 61.1111 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.4982 | 97.9310 | 99.0719 | 86.7466 | 852 | 18 | 854 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0344 | 98.9969 | 99.0719 | 86.7371 | 1283 | 13 | 1281 | 12 | 9 | 75.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | * | 98.5318 | 97.9978 | 99.0715 | 81.6035 | 1811 | 37 | 1814 | 17 | 5 | 29.4118 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | * | 98.5796 | 98.0926 | 99.0713 | 54.7462 | 32091 | 624 | 32325 | 303 | 168 | 55.4455 | |
| ltrigg-rtg1 | INDEL | * | map_siren | * | 97.9785 | 96.9096 | 99.0713 | 78.1949 | 7181 | 229 | 7147 | 67 | 16 | 23.8806 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2826 | 99.4949 | 99.0712 | 87.5674 | 197 | 1 | 320 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | homalt | 84.9295 | 74.3209 | 99.0709 | 76.2265 | 2052 | 709 | 2026 | 19 | 18 | 94.7368 | |