PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2351-2400 / 86044 show all
ltrigg-rtg2SNPtimap_l100_m1_e0hetalt
96.4286
93.1034
100.0000
61.9718
2722700
ltrigg-rtg2SNPtimap_l100_m2_e0hetalt
96.5517
93.3333
100.0000
64.5570
2822800
ltrigg-rtg2SNPtimap_l100_m2_e1hetalt
96.6667
93.5484
100.0000
63.7500
2922900
ltrigg-rtg2SNPtimap_l125_m0_e0hetalt
85.7143
75.0000
100.0000
70.0000
62600
ltrigg-rtg2SNPtimap_l125_m1_e0hetalt
95.6522
91.6667
100.0000
53.1915
2222200
ltrigg-rtg2SNPtimap_l125_m2_e0hetalt
95.6522
91.6667
100.0000
62.7119
2222200
ltrigg-rtg2SNPtimap_l125_m2_e1hetalt
95.6522
91.6667
100.0000
62.7119
2222200
ltrigg-rtg2SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
78.5714
30300
ltrigg-rtg2SNPtimap_l150_m1_e0hetalt
92.8571
86.6667
100.0000
61.7647
1321300
ltrigg-rtg2SNPtimap_l150_m2_e0hetalt
92.8571
86.6667
100.0000
69.0476
1321300
ltrigg-rtg2SNPtimap_l150_m2_e1hetalt
92.8571
86.6667
100.0000
69.0476
1321300
ltrigg-rtg2SNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
81.8182
22200
ltrigg-rtg2SNPtimap_l250_m2_e0hetalt
75.0000
60.0000
100.0000
78.5714
32300
ltrigg-rtg2SNPtimap_l250_m2_e1hetalt
75.0000
60.0000
100.0000
78.5714
32300
ltrigg-rtg2SNPtisegduphetalt
100.0000
100.0000
100.0000
98.6667
20200
ltrigg-rtg2SNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
42.2535
4104100
ltrigg-rtg2SNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
21.7668
858485900
ltrigg-rtg2SNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
ltrigg-rtg2SNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
25.7516
17040170400
ltrigg-rtg2SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
93.3333
00100
ltrigg-rtg2SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.1338
98.2824
100.0000
60.8029
515953700
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
76.7857
1211300
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7917
99.5842
100.0000
51.7737
479250300
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.8889
10100
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
62.0276
785182400
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.6276
525053900
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
90.6667
82.9268
100.0000
88.6861
3473100
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.7273
20300
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6000
97.2387
100.0000
79.3163
4931447800
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.7273
20300
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2481
98.5075
100.0000
78.1553
462745000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.1111
30400
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4631
98.9319
100.0000
77.5605
148216150300
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
92.8571
10100
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.3449
98.6984
100.0000
53.9460
174423173900
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
0.0000
00100
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
88.7097
63700
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8841
99.7685
100.0000
57.9364
38789387700
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
34.4828
20.8333
100.0000
90.9091
519500
jpowers-varprowlINDELI16_PLUSmap_l100_m1_e0homalt
33.3333
20.0000
100.0000
93.3333
14100
jpowers-varprowlINDELI16_PLUSmap_l100_m2_e0homalt
33.3333
20.0000
100.0000
94.4444
14100
jpowers-varprowlINDELI16_PLUSmap_l100_m2_e1homalt
33.3333
20.0000
100.0000
94.4444
14100
jpowers-varprowlINDELI16_PLUSmap_l250_m1_e0*
100.0000
100.0000
100.0000
95.8333
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m1_e0het
100.0000
100.0000
100.0000
95.0000
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m2_e0*
100.0000
100.0000
100.0000
96.2963
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m2_e0het
100.0000
100.0000
100.0000
95.2381
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m2_e1*
100.0000
100.0000
100.0000
96.6667
10100
jpowers-varprowlINDELI16_PLUSmap_l250_m2_e1het
100.0000
100.0000
100.0000
95.8333
10100