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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 472 473 474 475 476 477 478 479 480 ... 1720 1721 » 23751-23800 / 86044 show all
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.8172	98.5296	99.1064	71.0184	45030	672	45029	406	140	34.4828
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8172	98.5296	99.1064	71.0184	45030	672	45029	406	140	34.4828
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.8065	98.5086	99.1063	41.3831	24174	366	24176	218	209	95.8716
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	94.9121	91.0588	99.1060	39.4900	774	76	776	7	7	100.0000
egarrison-hhga	INDEL	D16_PLUS	*	hetalt	60.0179	43.0419	99.1060	48.8235	832	1101	776	7	6	85.7143
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e0	het	98.2852	97.4779	99.1060	84.2645	773	20	776	7	5	71.4286
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	80.7772	68.1698	99.1060	43.0545	771	360	776	7	7	100.0000
ndellapenna-hhga	INDEL	I1_5	map_l100_m2_e0	het	98.5410	97.9823	99.1060	84.5073	777	16	776	7	0	0.0000
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.8737	96.6718	99.1058	64.7457	63176	2175	62956	568	465	81.8662
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.8737	96.6718	99.1058	64.7457	63176	2175	62956	568	465	81.8662
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	73.7322	58.7029	99.1053	30.0313	4752	3343	4431	40	34	85.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1543	99.2037	99.1050	72.6597	30895	248	30895	279	24	8.6022
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1543	99.2037	99.1050	72.6597	30895	248	30895	279	24	8.6022
hfeng-pmm3	INDEL	D1_5	HG002compoundhet	*	95.5863	92.3089	99.1049	60.5859	11294	941	11293	102	95	93.1373
bgallagher-sentieon	SNP	*	map_l125_m2_e1	*	99.2798	99.4555	99.1048	72.9953	46945	257	46939	424	70	16.5094
ltrigg-rtg1	INDEL	D1_5	HG002compoundhet	*	96.8842	94.7609	99.1047	63.0486	11594	641	11623	105	78	74.2857
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	91.2250	84.5061	99.1045	23.0475	3927	720	3984	36	30	83.3333
hfeng-pmm3	SNP	ti	map_l250_m1_e0	*	99.0936	99.0828	99.1044	88.3618	4537	42	4537	41	5	12.1951
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.4779	95.9039	99.1043	49.4530	6626	283	6639	60	51	85.0000
raldana-dualsentieon	INDEL	D1_5	map_l100_m2_e0	*	98.5570	98.0157	99.1043	82.2749	1877	38	1881	17	5	29.4118
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4605	99.8195	99.1042	60.8242	3871	7	3872	35	0	0.0000
dgrover-gatk	INDEL	I1_5	map_l100_m1_e0	*	98.9542	98.8051	99.1038	84.0367	1323	16	1327	12	4	33.3333
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.6390	96.2169	99.1037	24.2483	763	30	774	7	6	85.7143
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.5612	98.0245	99.1037	50.2646	31360	632	31292	283	258	91.1661
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.3617	99.6215	99.1032	69.4732	45529	173	45529	412	31	7.5243
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.3617	99.6215	99.1032	69.4732	45529	173	45529	412	31	7.5243
rpoplin-dv42	SNP	tv	map_l100_m2_e1	het	99.1406	99.1781	99.1032	66.6722	15807	131	15803	143	59	41.2587
ndellapenna-hhga	SNP	tv	map_l250_m2_e1	het	97.3057	95.5725	99.1029	86.9625	1878	87	1878	17	8	47.0588
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	59.9599	42.9829	99.1026	48.8525	830	1101	773	7	6	85.7143
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	59.9599	42.9829	99.1026	48.8525	830	1101	773	7	6	85.7143
ltrigg-rtg2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3249	99.5483	99.1025	56.2469	35259	160	35334	320	23	7.1875
egarrison-hhga	INDEL	I6_15	*	hetalt	95.1738	91.5448	99.1023	37.9004	7828	723	7838	71	63	88.7324
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5300	97.9644	99.1021	62.8102	5727	119	5629	51	17	33.3333
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5300	97.9644	99.1021	62.8102	5727	119	5629	51	17	33.3333
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.1088	97.1353	99.1021	39.2213	23837	703	23839	216	207	95.8333
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4789	99.8586	99.1021	72.7252	3532	5	3532	32	32	100.0000
ltrigg-rtg1	INDEL	*	map_l100_m2_e1	het	96.7209	94.4516	99.1019	77.2848	2213	130	2207	20	2	10.0000
qzeng-custom	SNP	*	map_l150_m2_e1	homalt	80.8266	68.2422	99.1019	73.2731	8071	3756	7945	72	72	100.0000
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	60.5363	43.5780	99.1018	34.3811	380	492	331	3	2	66.6667
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.2031	95.3757	99.1018	76.8377	330	16	331	3	3	100.0000
gduggal-bwaplat	INDEL	I1_5	map_l125_m2_e0	het	79.6631	66.5996	99.1018	94.7845	331	166	331	3	1	33.3333
gduggal-bwafb	SNP	ti	map_l100_m1_e0	*	99.1029	99.1050	99.1009	66.4175	47502	429	47504	431	106	24.5940
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2492	99.3985	99.1004	39.5833	1322	8	1322	12	10	83.3333
rpoplin-dv42	SNP	tv	map_l100_m2_e0	het	99.1350	99.1697	99.1004	66.6194	15646	131	15642	142	59	41.5493
ltrigg-rtg1	INDEL	*	map_l125_m2_e1	het	96.2007	93.4659	99.1004	79.7418	1316	92	1322	12	0	0.0000
hfeng-pmm2	SNP	tv	map_l100_m2_e1	het	99.2765	99.4541	99.0995	70.8119	15851	87	15847	144	12	8.3333
hfeng-pmm1	INDEL	*	segdup	*	99.0215	98.9437	99.0995	94.0294	2529	27	2531	23	4	17.3913
gduggal-bwafb	SNP	ti	map_l100_m2_e0	*	99.1045	99.1095	99.0994	68.4259	48525	436	48527	441	108	24.4898
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.7965	98.4954	99.0994	71.1241	28280	432	28279	257	56	21.7899
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.7965	98.4954	99.0994	71.1241	28280	432	28279	257	56	21.7899

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