PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2301-2350 / 86044 show all
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8849
99.7700
100.0000
52.7633
607414607700
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
70.5882
50500
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_51to200*
94.1176
88.8889
100.0000
94.9640
81700
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.0820
70600
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
94.1176
11100
ltrigg-rtg2SNP*map_l100_m0_e0hetalt
93.3333
87.5000
100.0000
64.1026
1421400
ltrigg-rtg2SNP*map_l100_m1_e0hetalt
96.2025
92.6829
100.0000
63.4615
3833800
ltrigg-rtg2SNP*map_l100_m2_e0hetalt
96.2963
92.8571
100.0000
66.0870
3933900
ltrigg-rtg2SNP*map_l100_m2_e1hetalt
96.3855
93.0233
100.0000
65.5172
4034000
ltrigg-rtg2SNP*map_l125_m0_e0hetalt
87.5000
77.7778
100.0000
74.0741
72700
ltrigg-rtg2SNP*map_l125_m1_e0hetalt
96.5517
93.3333
100.0000
61.1111
2822800
ltrigg-rtg2SNP*map_l125_m2_e0hetalt
96.5517
93.3333
100.0000
67.4419
2822800
ltrigg-rtg2SNP*map_l125_m2_e1hetalt
96.5517
93.3333
100.0000
67.4419
2822800
ltrigg-rtg2SNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
30300
ltrigg-rtg2SNP*map_l150_m1_e0hetalt
94.7368
90.0000
100.0000
67.2727
1821800
ltrigg-rtg2SNP*map_l150_m2_e0hetalt
94.7368
90.0000
100.0000
71.4286
1821800
ltrigg-rtg2SNP*map_l150_m2_e1hetalt
94.7368
90.0000
100.0000
71.4286
1821800
ltrigg-rtg2SNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.8889
22200
ltrigg-rtg2SNP*map_l250_m2_e0hetalt
75.0000
60.0000
100.0000
86.9565
32300
ltrigg-rtg2SNP*map_l250_m2_e1hetalt
75.0000
60.0000
100.0000
86.9565
32300
ltrigg-rtg2SNP*segduphetalt
100.0000
100.0000
100.0000
96.8037
70700
ltrigg-rtg2SNP*tech_badpromotershomalt
100.0000
100.0000
100.0000
48.0519
8008000
ltrigg-rtg2SNPtiHG002compoundhethetalt
99.7403
99.4819
100.0000
21.4966
576357700
ltrigg-rtg2SNPtifunc_cdshetalt
100.0000
100.0000
100.0000
50.0000
80800
ltrigg-rtg2SNPtifunc_cdshomalt
99.9526
99.9052
100.0000
20.2844
52705527000
ltrigg-rtg2SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
90.0000
00100
ltrigg-rtg2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
82.3529
51600
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7779
99.5567
100.0000
49.8447
11235113000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7607
99.5225
100.0000
43.1975
14597147800
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8249
99.6503
100.0000
45.9813
855386700
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.0233
86.9565
100.0000
86.6667
6096000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10200
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4596
95.0450
100.0000
78.5906
4222239800
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10200
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0027
96.0836
100.0000
76.6463
3681534400
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.6552
20300
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3336
98.6760
100.0000
74.6486
238532238100
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
88.8889
10100
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.3741
98.7559
100.0000
56.8481
166721167300
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
0.0000
00100
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
93.6508
42400
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8863
99.7728
100.0000
39.6930
21965220000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
88.8889
10100
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
93.2584
71600
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
93.6709
60500
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
90.0000
11100
ltrigg-rtg2SNPtimap_l100_m0_e0hetalt
92.3077
85.7143
100.0000
61.2903
1221200