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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 450 451 452 453 454 455 456 457 458 ... 1720 1721 » 22651-22700 / 86044 show all
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.2504	99.2513	99.2495	62.6333	15642	118	15472	117	78	66.6667
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.5024	95.8159	99.2494	33.8300	1145	50	1190	9	8	88.8889
ltrigg-rtg1	INDEL	I1_5	map_l125_m1_e0	*	97.6099	96.0241	99.2491	81.0529	797	33	793	6	1	16.6667
ndellapenna-hhga	INDEL	I16_PLUS	HG002compoundhet	hetalt	90.0250	82.3698	99.2490	40.2898	1724	369	1718	13	9	69.2308
hfeng-pmm3	SNP	ti	map_l150_m0_e0	*	99.2301	99.2113	99.2490	79.5379	7799	62	7797	59	6	10.1695
hfeng-pmm1	INDEL	D1_5	map_l125_m1_e0	*	98.0946	96.9669	99.2488	83.4909	1055	33	1057	8	1	12.5000
hfeng-pmm3	SNP	ti	map_l125_m0_e0	het	99.1947	99.1407	99.2487	75.9543	8192	71	8190	62	6	9.6774
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4029	99.5574	99.2487	52.2265	17772	79	17835	135	7	5.1852
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	76.0747	61.6742	99.2486	27.4889	2866	1781	2906	22	22	100.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	98.6351	98.0293	99.2485	64.1671	9501	191	9509	72	32	44.4444
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.3750	95.5710	99.2485	52.6679	6603	306	6603	50	45	90.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	75.4780	60.8939	99.2481	29.2553	109	70	132	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e0	homalt	99.3415	99.4350	99.2481	82.1297	528	3	528	4	2	50.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	89.7959	81.9876	99.2481	34.4828	132	29	132	1	1	100.0000
hfeng-pmm1	INDEL	I1_5	map_l100_m1_e0	*	98.7628	98.2823	99.2481	82.0270	1316	23	1320	10	4	40.0000
ckim-isaac	INDEL	D1_5	map_l150_m2_e0	homalt	70.4000	54.5455	99.2481	84.0144	132	110	132	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2481	99.2481	99.2481	82.9814	264	2	264	2	1	50.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7772	92.5409	99.2481	35.3886	1526	123	1716	13	13	100.0000
gduggal-snapfb	SNP	*	map_l250_m2_e1	homalt	95.5941	92.2001	99.2475	92.8509	2506	212	2506	19	10	52.6316
ltrigg-rtg2	INDEL	D1_5	map_l125_m1_e0	*	98.0469	96.8750	99.2474	78.8205	1054	34	1055	8	1	12.5000
egarrison-hhga	INDEL	I1_5	HG002complexvar	homalt	99.1848	99.1225	99.2472	49.0370	13330	118	13315	101	64	63.3663
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6834	94.2486	99.2472	33.8314	1524	93	1714	13	13	100.0000
cchapple-custom	SNP	*	HG002compoundhet	het	98.9809	98.7163	99.2469	44.7646	13996	182	16209	123	92	74.7967
bgallagher-sentieon	INDEL	I1_5	segdup	*	99.2928	99.3390	99.2467	94.4424	1052	7	1054	8	2	25.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6218	100.0000	99.2465	77.6468	922	0	922	7	3	42.8571
astatham-gatk	SNP	*	map_l150_m0_e0	het	90.3676	82.9471	99.2462	85.7275	6586	1354	6583	50	12	24.0000
eyeh-varpipe	SNP	ti	*	hetalt	99.5363	99.8282	99.2460	38.4448	581	1	6450	49	47	95.9184
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5524	94.0012	99.2459	33.5901	1520	97	1711	13	13	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.2112	93.3565	99.2459	50.4272	6450	459	6449	49	44	89.7959
asubramanian-gatk	INDEL	I1_5	HG002complexvar	hetalt	97.2967	95.4229	99.2455	71.3930	1647	79	1710	13	11	84.6154
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
rpoplin-dv42	SNP	*	map_l125_m2_e1	het	99.1114	98.9777	99.2454	71.6791	29337	303	29331	223	129	57.8475
ndellapenna-hhga	INDEL	I1_5	map_l100_m2_e0	homalt	99.1517	99.0584	99.2453	82.4212	526	5	526	4	2	50.0000
gduggal-snapplat	SNP	tv	func_cds	het	99.1144	98.9838	99.2453	45.4845	2630	27	2630	20	0	0.0000
ltrigg-rtg1	INDEL	I1_5	map_l100_m2_e0	homalt	99.3401	99.4350	99.2453	81.4685	528	3	526	4	2	50.0000
gduggal-bwafb	INDEL	D1_5	HG002compoundhet	hetalt	93.3119	88.0482	99.2450	76.1026	8995	1221	3549	27	27	100.0000
asubramanian-gatk	INDEL	I6_15	HG002complexvar	hetalt	96.0912	93.1316	99.2450	56.3849	1139	84	1183	9	7	77.7778
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3494	99.4543	99.2447	49.9340	5650	31	5650	43	42	97.6744
hfeng-pmm2	INDEL	I1_5	segdup	*	99.1501	99.0557	99.2446	94.4523	1049	10	1051	8	2	25.0000
hfeng-pmm1	INDEL	I1_5	segdup	*	99.1501	99.0557	99.2446	94.2109	1049	10	1051	8	2	25.0000
ckim-isaac	INDEL	*	HG002compoundhet	hetalt	88.0188	79.0747	99.2444	32.7152	19911	5269	20095	153	126	82.3529
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.1522	95.1464	99.2443	33.7229	1137	58	1182	9	8	88.8889
jlack-gatk	SNP	tv	map_l250_m2_e0	homalt	98.6581	98.0790	99.2441	87.2434	919	18	919	7	5	71.4286
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.5518	97.8697	99.2436	49.7895	21776	474	21780	166	153	92.1687
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.8593	98.4779	99.2436	74.6743	647	10	656	5	1	20.0000
bgallagher-sentieon	SNP	*	map_siren	het	99.4455	99.6483	99.2436	58.2943	90671	320	90657	691	77	11.1433
ckim-isaac	SNP	tv	map_l250_m2_e1	het	63.5294	46.7176	99.2432	92.2217	918	1047	918	7	1	14.2857
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.8486	98.4572	99.2431	55.7060	16912	265	16914	129	121	93.7984
qzeng-custom	SNP	*	map_l125_m1_e0	homalt	83.2331	71.6711	99.2430	64.3421	12116	4789	11930	91	90	98.9011

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