PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
22351-22400 / 86044 show all
gduggal-bwaplatSNPtvmap_l100_m0_e0het
74.3090
59.3741
99.2822
90.5912
4288293442883110
32.2581
cchapple-customSNPtiHG002compoundhethet
99.0513
98.8217
99.2820
39.9079
9393112102337460
81.0811
ckim-isaacSNP*map_l250_m2_e0het
67.0153
50.5776
99.2819
92.1809
262725672627192
10.5263
hfeng-pmm3SNPtvmap_l150_m2_e0het
99.2203
99.1589
99.2819
76.4022
7191617189525
9.6154
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
95.7361
92.4350
99.2817
26.1684
441136144233226
81.2500
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2817
99.2817
99.2817
83.4450
2626192626196
31.5789
ghariani-varprowlSNPtvmap_l150_m1_e0homalt
98.6612
98.0487
99.2815
73.6565
38697738692815
53.5714
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.5651
93.9933
99.2815
52.4049
649441564944742
89.3617
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2626
99.2439
99.2814
84.2685
2625202625197
36.8421
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2264
95.2551
99.2811
61.5901
801039980105849
84.4828
hfeng-pmm3INDELI1_5map_l100_m2_e1*
98.9946
98.7097
99.2811
82.7868
1377181381103
30.0000
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
96.5190
93.9068
99.2806
63.1788
2621727622
100.0000
hfeng-pmm2INDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
96.7657
94.3750
99.2806
89.2830
151913810
0.0000
ckim-isaacSNP*tech_badpromoters*
93.2432
87.8981
99.2806
31.5271
1381913810
0.0000
ckim-isaacSNPtvmap_l250_m1_e0het
63.1820
46.3346
99.2806
91.7792
82895982861
16.6667
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.6672
92.3077
99.2806
52.6405
2642227622
100.0000
gduggal-bwavardINDELD1_5map_l125_m0_e0homalt
97.5848
95.9459
99.2806
83.0694
142613811
100.0000
qzeng-customINDELD1_5map_l125_m0_e0homalt
83.6672
72.2973
99.2806
87.5224
1074113811
100.0000
dgrover-gatkSNPtimap_l150_m2_e1*
99.2396
99.1990
99.2803
78.3146
205571662055314936
24.1611
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50het
98.7140
98.1541
99.2803
63.6850
30315730352210
45.4545
gduggal-bwaplatSNP*map_l150_m0_e0*
57.1530
40.1263
99.2803
94.5754
4828720448283515
42.8571
jli-customINDEL*map_siren*
98.8895
98.5020
99.2800
80.4395
729911173085317
32.0755
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5832
95.9437
99.2798
56.3557
3013412743018821993
42.4658
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5832
95.9437
99.2798
56.3557
3013412743018821993
42.4658
gduggal-bwavardSNPtvmap_l250_m1_e0homalt
98.1672
97.0794
99.2797
87.2766
8312582764
66.6667
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.5789
95.9353
99.2797
63.8316
509821651003730
81.0811
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6175
96.0100
99.2797
41.3870
806133516539120106
88.3333
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.7291
96.2264
99.2795
65.1606
7142868951
20.0000
qzeng-customSNPtimap_l125_m0_e0homalt
76.3240
61.9906
99.2790
71.5020
2784170727542019
95.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.1608
99.0431
99.2788
45.5497
414441330
0.0000
jpowers-varprowlSNPtvmap_l250_m1_e0homalt
97.8673
96.4953
99.2788
90.2072
8263082662
33.3333
ltrigg-rtg2INDELI1_5map_l125_m2_e0*
98.0491
96.8495
99.2788
82.1574
8302782660
0.0000
hfeng-pmm3SNPtvmap_l150_m1_e0het
99.2002
99.1218
99.2788
75.3081
6885616883505
10.0000
gduggal-snapfbSNP*map_l250_m2_e0homalt
95.6387
92.2561
99.2788
92.8119
247820824781810
55.5556
dgrover-gatkSNPtimap_l150_m1_e0*
99.2284
99.1782
99.2787
76.9359
195501621954614235
24.6479
ltrigg-rtg2INDELD1_5map_l100_m1_e0*
98.1106
96.9697
99.2786
76.3393
1792561789131
7.6923
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3017
99.3248
99.2786
49.2620
4266294266312
6.4516
gduggal-bwaplatINDELD1_5map_siren*
87.3512
77.9824
99.2785
89.5187
27527772752207
35.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8815
98.4877
99.2784
83.9265
2605402614199
47.3684
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.0378
96.8281
99.2780
56.6258
1553850915539113101
89.3805
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.9050
98.5348
99.2780
72.0061
538855041
25.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-dragenINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
96.5177
93.9068
99.2780
66.5459
2621727522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5866
99.8975
99.2777
41.4403
107211110721781
1.2821
hfeng-pmm1INDELI1_5map_l100_m2_e1*
98.7398
98.2079
99.2775
83.4529
1370251374104
40.0000
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
85.1654
74.5662
99.2771
27.6058
16335571648129
75.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.2797
99.2823
99.2771
46.2435
415341230
0.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
98.5119
97.7585
99.2769
36.5690
924621291996751
76.1194
hfeng-pmm3INDELD1_5map_l100_m2_e1*
99.0966
98.9170
99.2769
81.5232
1918211922143
21.4286