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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 442 443 444 445 446 447 448 449 450 ... 1720 1721 » 22251-22300 / 86044 show all
jli-custom	SNP	ti	map_l150_m2_e0	het	98.9128	98.5327	99.2958	74.7496	12692	189	12690	90	30	33.3333
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	88.2579	79.4286	99.2958	64.2317	139	36	141	1	1	100.0000
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5765	99.8591	99.2956	64.7620	27639	39	27629	196	19	9.6939
ckim-dragen	INDEL	I6_15	*	het	98.9990	98.7043	99.2956	59.4838	9903	130	9867	70	31	44.2857
ckim-isaac	INDEL	I1_5	HG002compoundhet	hetalt	90.1858	82.6071	99.2955	37.7647	9233	1944	9162	65	55	84.6154
qzeng-custom	INDEL	*	HG002compoundhet	hetalt	86.4434	76.5369	99.2955	48.8192	19272	5908	5638	40	29	72.5000
jli-custom	SNP	ti	map_l150_m2_e1	het	98.9202	98.5478	99.2954	74.8618	12826	189	12824	91	30	32.9670
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4948	99.6956	99.2948	79.7023	655	2	704	5	3	60.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.7983	98.3069	99.2946	51.3464	1800	31	1830	13	2	15.3846
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.3219	95.4262	99.2945	64.0832	17004	815	17030	121	44	36.3636
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5579	99.8227	99.2945	72.0827	563	1	563	4	4	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5579	99.8227	99.2945	71.7629	563	1	563	4	4	100.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e1	*	98.2094	97.1478	99.2945	84.5735	1124	33	1126	8	1	12.5000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.4797	95.7302	99.2944	52.9989	6614	295	6614	47	42	89.3617
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	94.7339	90.5742	99.2941	29.5191	836	87	844	6	5	83.3333
ckim-isaac	INDEL	*	map_l125_m1_e0	homalt	72.9473	57.6503	99.2941	79.6358	422	310	422	3	1	33.3333
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	83.1268	71.4871	99.2941	36.3772	1221	487	422	3	3	100.0000
hfeng-pmm1	SNP	ti	map_l125_m0_e0	het	99.0169	98.7414	99.2940	75.6362	8159	104	8157	58	15	25.8621
gduggal-bwafb	SNP	*	func_cds	*	99.6211	99.9504	99.2939	30.1552	18141	9	18141	129	2	1.5504
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	90.1203	82.4985	99.2938	30.7241	1334	283	1406	10	10	100.0000
ckim-isaac	SNP	*	map_l250_m1_e0	het	66.7411	50.2629	99.2937	91.8401	2390	2365	2390	17	1	5.8824
hfeng-pmm2	SNP	*	map_l125_m2_e1	*	99.3819	99.4704	99.2936	73.5231	46952	250	46946	334	39	11.6766
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.6037	94.0559	99.2933	56.1920	269	17	281	2	2	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1765	99.0599	99.2933	88.5872	843	8	843	6	4	66.6667
dgrover-gatk	INDEL	D1_5	map_siren	*	99.2924	99.2916	99.2932	82.3565	3504	25	3512	25	5	20.0000
mlin-fermikit	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	57.4807	40.4480	99.2929	38.4711	957	1409	983	7	6	85.7143
egarrison-hhga	INDEL	I1_5	HG002complexvar	*	98.9362	98.5823	99.2928	54.0549	32890	473	32852	234	120	51.2821
bgallagher-sentieon	SNP	*	map_l100_m2_e1	*	99.4314	99.5705	99.2927	67.0857	74416	321	74405	530	81	15.2830
ckim-isaac	SNP	*	map_l250_m2_e1	het	67.0943	50.6649	99.2926	92.2258	2667	2597	2667	19	2	10.5263
astatham-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1675	99.0429	99.2924	73.5960	93545	904	93452	666	582	87.3874
jli-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3229	99.3534	99.2923	66.7825	3227	21	3227	23	6	26.0870
raldana-dualsentieon	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.1509	97.0356	99.2922	64.9042	1964	60	1964	14	0	0.0000
mlin-fermikit	INDEL	I6_15	HG002compoundhet	hetalt	71.1432	55.4293	99.2920	28.6902	4732	3805	4768	34	34	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.4273	99.5631	99.2919	54.6106	1823	8	1823	13	0	0.0000
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4104	99.5294	99.2916	44.4954	846	4	841	6	6	100.0000
hfeng-pmm3	SNP	tv	map_l150_m2_e1	het	99.2305	99.1698	99.2913	76.4144	7287	61	7285	52	5	9.6154
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.1612	99.0320	99.2908	52.9835	2660	26	2660	19	2	10.5263
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.4177	93.7063	99.2908	56.4815	268	18	280	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0399	98.7903	99.2908	71.3498	980	12	980	7	2	28.5714
ckim-dragen	SNP	*	map_l250_m2_e0	homalt	99.1424	98.9948	99.2905	83.9458	2659	27	2659	19	16	84.2105
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.8735	96.4965	99.2905	49.4936	6445	234	6437	46	35	76.0870
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.3295	95.4449	99.2901	33.1072	901	43	979	7	7	100.0000
ckim-vqsr	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4006	99.5116	99.2899	63.6333	35246	173	35235	252	21	8.3333
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	96.9984	94.8103	99.2899	54.8611	1699	93	1678	12	9	75.0000
ltrigg-rtg1	INDEL	*	map_l125_m2_e0	*	97.2353	95.2641	99.2898	83.0932	2092	104	2097	15	3	20.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.3244	88.0353	99.2898	87.3699	699	95	699	5	3	60.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.9509	94.7199	99.2895	61.7800	7965	444	7965	57	48	84.2105
jmaeng-gatk	INDEL	D1_5	*	het	99.4941	99.6997	99.2893	60.9724	87311	263	87316	625	129	20.6400
hfeng-pmm3	INDEL	D6_15	*	*	98.0738	96.8879	99.2891	51.0206	25280	812	25279	181	162	89.5028
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	89.1443	80.8806	99.2888	68.7833	698	165	698	5	4	80.0000

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